View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582_low_7 (Length: 395)
Name: NF4582_low_7
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582_low_7 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 23358102 - 23357735
Alignment:
| Q |
11 |
tgagatgaacaaggtttccttctttgtttacgctcaatatgccggatttgtcactgattggattgttgcgattggctacccaaacaactgtttttatagg |
110 |
Q |
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| T |
23358102 |
tgagaagaacaaggtttccttctttgtttacgctcaatatgccggatttgtcactgattggattgtcgcgatttgctacccaaacaactgtttttaaagg |
23358003 |
T |
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| Q |
111 |
gataattttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaaacccagttcaaatgctccattgaccaaggtgcttccatcatgt |
210 |
Q |
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| T |
23358002 |
gatagttttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaaacccagttcaaatgctccattgaccaaggtgcttccatcatgt |
23357903 |
T |
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| Q |
211 |
agtggaagaaattgtgttatgatatctgtttcagaggaaattttgatggnnnnnnngagtaaattaacaacaaaaaacatgatagatagaatggccattt |
310 |
Q |
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| T |
23357902 |
agtggaagaaattgtgttatgatatctgtttcagaggaaattttgatggaaaaaaagagtaaattaacaacaaaaaacatgatagatagaatggccattt |
23357803 |
T |
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| Q |
311 |
tttgtgtaagtaagaaccacccgaagttgaagataacacattaagtaggagcaaggttttaaataaag |
378 |
Q |
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| T |
23357802 |
tttgtgtaagtaagaaccacacgaaattgaagataacacattaagtaggagcaaggttttaaataaag |
23357735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 23551743 - 23551642
Alignment:
| Q |
69 |
tggattgttgcgattggctacccaaacaactgtttttatagggataattttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaaa |
168 |
Q |
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| T |
23551743 |
tggattatcgcgattggcaacccaaactacagtcttaaccgggatgtttttgtaccaaattccgacatagcggtttggggaattacctggactgaagaaa |
23551644 |
T |
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| Q |
169 |
cc |
170 |
Q |
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| T |
23551643 |
cc |
23551642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 10459 - 10564
Alignment:
| Q |
65 |
tgattggattgttgcgattggctacccaaacaactgtttttatagggataattttgaaccaaattcctacatagcggtttgtggaactaccaggactgaa |
164 |
Q |
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| T |
10459 |
tgattggattgtcacgattggcaacccaaacaactcttctaaccgggatatttttgtaccaaattccaacatagcggttcgtggaactacctggattgaa |
10558 |
T |
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| Q |
165 |
gaaacc |
170 |
Q |
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| T |
10559 |
gaaacc |
10564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 22692382 - 22692438
Alignment:
| Q |
116 |
ttttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaaaccca |
172 |
Q |
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| T |
22692382 |
ttttgtaccaaagtccgacatagcggtttgatgaactacctggactgaaaaaaccca |
22692438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 28417646 - 28417542
Alignment:
| Q |
68 |
ttggattgttgcgattggctacccaaacaactgtttttatagggataattttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaa |
167 |
Q |
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| T |
28417646 |
ttggattgtttcgatttgcaacccaaaccactcttcgaacggggatatttttgtaccatattcctacatagcggtttaaggacttaccgggtctgaagaa |
28417547 |
T |
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| Q |
168 |
accca |
172 |
Q |
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| T |
28417546 |
accca |
28417542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 28426179 - 28426075
Alignment:
| Q |
68 |
ttggattgttgcgattggctacccaaacaactgtttttatagggataattttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaa |
167 |
Q |
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|||||||||| ||||| || |||||||| ||| || | |||||| ||||| |||| |||||||||||||||||| ||| |||| || |||||||| |
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| T |
28426179 |
ttggattgtttcgatttgcaacccaaaccactcttcgaacggggatatttttgtaccatattcctacatagcggtttaaggacttaccgggtctgaagaa |
28426080 |
T |
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| Q |
168 |
accca |
172 |
Q |
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||||| |
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| T |
28426079 |
accca |
28426075 |
T |
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