View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4583-Insertion-1 (Length: 843)
Name: NF4583-Insertion-1
Description: NF4583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4583-Insertion-1 |
 | |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 759; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 8 - 843
Target Start/End: Original strand, 23871300 - 23872134
Alignment:
| Q |
8 |
atatttgacttttaagcatggaccatttcctggaagacatacatacccatgattcttcatatgaccttttatcatgtgttgttatttagttaggggtaat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
23871300 |
atatttgacttttaagcatggaccatttcctggaagacataaatacccatgattcttcatatgaccttttatcatgtgttgttgtttagttaggtgtaat |
23871399 |
T |
|
| Q |
108 |
atggtaagcagctgaatcaatgaaccagttctctaattgtttagaaggactagaactacccatttcaaacttcgattggttatgggctttggatttgtat |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23871400 |
atggtaagcagctgaatcaatgaaccagttctctaattgtttagaaggactaaaactacccatttcaaacttcgattggttatgggctttggatttgtat |
23871499 |
T |
|
| Q |
208 |
ttcaaatttaagtaagaattcactactcgagtttgagggatttgaatttcctgctgttatagcatgacgccgtaagagatgaagaccaccatctgcttta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23871500 |
ttcaaatttaagtaagaattcactactcgagtttgagggatttgaatttcctgctgttatagcatgacgccgtaagagatgaagaccaccatctgcttta |
23871599 |
T |
|
| Q |
308 |
aaatgtgtggctgatattgttttgaatgattttataattgtattgattattctctcgtnnnnnnnttgtattgatttggaccgtttgatctttaattaat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
23871600 |
aaatgtgtggctgatattgttttgaatgattttataattgtattgattattctctcgtaataaaattgtattgatttggaccgtttgatctttaattaat |
23871699 |
T |
|
| Q |
408 |
ggtcgagatttagtatagcgtgaaaactgtgtgctttattaaagcacggaataccaatccgagtttgagtggaatgttaaagtagaattctcaatttctg |
507 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
23871700 |
ggtcgagatttagtatagagtgaaaactgtgtgctttattaaagcacggaataccaatccgagtttgagtggaatgttaaagtagaattctcaatttttg |
23871799 |
T |
|
| Q |
508 |
aacattgaattttaaattcacgtgtacaaattaaacgtaaattgagttggtctagtgatgttagcttggacatgcaagtgtgtttcttccaaagtctcaa |
607 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23871800 |
aacattaaattttaaattcacgtgtacaaattaaacgtaaattgagttggtctagtgatgttagcttggacatgcaagtgtgtttcttccaaagtctcaa |
23871899 |
T |
|
| Q |
608 |
tttcgatttttctcgatgcaaatttaggtgagttagtttaatgatgttgacctgaacattggaatgagctcctctcaaagttttagattcgattcttctt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
23871900 |
tttcgatttttctcgatgcaaatttaggtgagttagtttaatggtgttgacctgaacattgaaatgagctcctctcaaagtcttagattcgattcttctt |
23871999 |
T |
|
| Q |
708 |
gatgtaaatttaagtggaccaatttaacttcttaaaagaacaaaattaaatgatatgataacaaggtgtaaaatatttcaacgatccattaatttgttgt |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
23872000 |
gatgtaaatttaagtggaccaatttaacttcttaaaaaaacaaaattaaatgatatgataacaa-gtgtaaaatatttcaacgatccattaatttgttgt |
23872098 |
T |
|
| Q |
808 |
tggaagatttattttaaactaatgctaaaccacaag |
843 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23872099 |
tggaagatttattttaaacaaatgctaaaccacaag |
23872134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 8 - 843
Target Start/End: Complemental strand, 22707524 - 22706690
Alignment:
| Q |
8 |
atatttgacttttaagcatggaccatttcctggaagacatacatacccatgattcttcatatgaccttttatcatgtgttgttatttagttaggggtaat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| |
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|
| T |
22707524 |
atatttgacttttaagcatggaccatttcctggaagacatacatacccatgattcttcatatgacctattatcatgtgttgttgtttagttaggtgtaat |
22707425 |
T |
|
| Q |
108 |
atggtaagcagctgaatcaatgaaccagttctctaattgtttagaaggactagaactacccatttcaaacttcgattggttatgggctttggatttgtat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22707424 |
atggtaagcagctgaatcaatgaaccagttctctaattgtttagaaggactagaactacccatttcaaacttcgattggttatgggctttggatttgtat |
22707325 |
T |
|
| Q |
208 |
ttcaaatttaagtaagaattcactactcgagtttgagggatttgaatttcctgctgttatagcatgacgccgtaagagatgaagaccaccatctgcttta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22707324 |
ttcaaatttaagtaagaattcactactcgagtttgtgggatttgaatttcctgctgtcacagcatgacgccgtagcagatgaagaccaccatctgcttta |
22707225 |
T |
|
| Q |
308 |
aaatgtgtggctgatattgttttgaatgattttataattgtattgattattctctcgtnnnnnnnttgtattgatttggaccgtttgatctttaattaat |
407 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| || |||| |||||||||||| |
|
|
| T |
22707224 |
aaatgtgtggctgaaattgttttgaatgatattataattgtattgattattctctaa-aaaataattgtattgaattggcccatttgctctttaattaat |
22707126 |
T |
|
| Q |
408 |
ggtcgagatttagtatagcgtgaaaactgtgtgctttattaaagcacggaataccaatccgagtttgagtggaatgttaaa-gtagaattctcaatttct |
506 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22707125 |
ggccgagatttagtatagcgtgaaaactgtgtgctttattacagcatggaatatcaatccgagtttgagtggaatgttaaaagtagaattctcaatttct |
22707026 |
T |
|
| Q |
507 |
gaacattgaattttaaattcac-gtgtacaaattaaacgtaaattgagttggtctagtgatgttagcttggacatgcaagtgtgtttcttccaaagtctc |
605 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
22707025 |
gaacattaaattttaaatttacagtgtacaaattaaatgtaaattgagttggtctagtgatgttagtttggacatgcaagtgtgtttctttcaaagtctc |
22706926 |
T |
|
| Q |
606 |
aatttcgatttttctcgatgcaaatttaggtgagttagtttaatgatgttgacctgaacattggaatgagctcctctcaaagttttagattcgattcttc |
705 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
22706925 |
aatttcgattcttctcaatgcaaatttaggtgagttagtttgatggtgttggcctgaacattggaatgtgctcatctcaaaattttagattcgattcttc |
22706826 |
T |
|
| Q |
706 |
ttgatgtaaatttaagtggaccaatttaacttcttaaaagaacaaaattaaatgatatgataacaaggtgtaaaatatttcaacgatccattaatttgtt |
805 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
22706825 |
ttgatgcaaatttaagtggaccattttgactt-ttcaaaaaacaaaattaaatgatatgataacaa-gtgtaaaatatttcaacgatccattaatttgtt |
22706728 |
T |
|
| Q |
806 |
gttggaagatttattttaaactaatgctaaaccacaag |
843 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22706727 |
gttggaagatttattttaaacaaatgctaaaccacaag |
22706690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 388 - 448
Target Start/End: Original strand, 11575768 - 11575828
Alignment:
| Q |
388 |
ccgtttgatctttaattaatggtcgagatttagtatagcgtgaaaactgtgtgctttatta |
448 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||||| | |||| |||||||||||||||||| |
|
|
| T |
11575768 |
ccgtttgatatttaattaatgattgagatttagtacaacgtgcaaactgtgtgctttatta |
11575828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 796 - 843
Target Start/End: Complemental strand, 22708769 - 22708722
Alignment:
| Q |
796 |
ttaatttgttgttggaagatttattttaaactaatgctaaaccacaag |
843 |
Q |
| |
|
|||||||| || |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
22708769 |
ttaatttgctgatggatgatttattttaaacaaatgctaaaccacaag |
22708722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 377 - 467
Target Start/End: Complemental strand, 47812884 - 47812794
Alignment:
| Q |
377 |
attgatttggaccgtttgatctttaattaatggtcgagatttagtatagcgtgaaaactgtgtgctttattaaagcacggaataccaatcc |
467 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
47812884 |
attgatttgaaccatttgatctttaattaatggctgaaattcagtacagcgtgaaaactgtgtgctttattacagcacggaatcccaatcc |
47812794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 47812924 - 47812878
Alignment:
| Q |
309 |
aatgtgtggctgatattgttttgaatgattttataattgtattgatt |
355 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
47812924 |
aatgtgcggctgatattgttttgaatgattttataactgcattgatt |
47812878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 377 - 468
Target Start/End: Original strand, 28851024 - 28851115
Alignment:
| Q |
377 |
attgatttggaccgtttgatctttaattaatggtcgagatttagtatagcgtgaaaactgtgtgctttattaaagcacggaataccaatccg |
468 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| || ||| | || ||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
28851024 |
attgatttgaaccatttgatctttaattaatggctgaaattcaatacagcgtgaaaactgtgtgctttattacagcacggaatcccaatccg |
28851115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 16677303 - 16677372
Alignment:
| Q |
390 |
gtttgatctttaattaatggtcgagatttagtatagcgtgaaaactgtgtgctttattaaagcacggaat |
459 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||| || |||||||||||| |||| |||| |||||||||| |
|
|
| T |
16677303 |
gtttgatcttcaattcatggtcgagatcatgtacagtgtgaaaactgtgagcttaattacagcacggaat |
16677372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 377 - 459
Target Start/End: Original strand, 35003497 - 35003579
Alignment:
| Q |
377 |
attgatttggaccgtttgatctttaattaatggtcgagatttagtatagcgtgaaaactgtgtgctttattaaagcacggaat |
459 |
Q |
| |
|
||||||||| ||| || |||||||||||||||||||||||||||| | | | ||||||||||||||||||| | |||||||| |
|
|
| T |
35003497 |
attgatttgaaccattcaatctttaattaatggtcgagatttagtacatcataaaaactgtgtgctttattacaacacggaat |
35003579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 387 - 467
Target Start/End: Complemental strand, 14608741 - 14608662
Alignment:
| Q |
387 |
accgtttgatctttaattaatggtcgagatttagtatagcgtgaaaactgtgtgctttattaaagcacggaataccaatcc |
467 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||| ||||| |||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
14608741 |
accgtttgatctttaattaatagtcaggatcctgtacagcgt-aaaactgtgtgctttactacagcacggaatcccaatcc |
14608662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 374 - 467
Target Start/End: Original strand, 1700891 - 1700984
Alignment:
| Q |
374 |
tgtattgatttggaccgtttgatctttaattaatggtcgagatttagtatagcgtgaaaactgtgtgctttattaaagcacggaataccaatcc |
467 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||| ||| | ||| |||||||||| || |||||||| || | |||||||| ||||||| |
|
|
| T |
1700891 |
tgtattaatctgtaccgtttgatctttaattaatggtcaggatcttgtacagcgtgaaaattgcgtgctttactacaacacggaatcccaatcc |
1700984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 208636 - 208715
Alignment:
| Q |
387 |
accgtttgatctttaattaatggtcgagatttagtatagcgtgaaaactgtgtgctttattaaagcacggaataccaatcc |
467 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||| ||||| |||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
208636 |
accgtttgatctttaattaatagtcaggatcctgtacagcgt-aaaactgtgtgctttactacagcacggaatcccaatcc |
208715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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