View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4583-Insertion-2 (Length: 787)
Name: NF4583-Insertion-2
Description: NF4583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4583-Insertion-2 |
 | |
|
| [»] chr2 (8 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 679; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 73 - 787
Target Start/End: Original strand, 34448224 - 34448938
Alignment:
| Q |
73 |
tagtttgaattatcaatacaacaataaaaacgattcacgatcaaggaaaaacaaattgattaacatgtaaaatagccacttattataactgatcttgctt |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448224 |
tagtttgaattatcaatacaacaataaaaacgattcacgatcaaggaaaaacagaaggattaaaatgtaaaatagccacttattataactgatcttgctt |
34448323 |
T |
|
| Q |
173 |
cttctactcactttgctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagttctggttttgtgtatttatcctcaaagttttcg |
272 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448324 |
cttctactcacttagctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagttctggttttgtgtatttatcctcaaagttttcg |
34448423 |
T |
|
| Q |
273 |
tatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttgagacactcttcattcatgaccttccaat |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448424 |
tatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttgagacactcttcattcatgaccttccaat |
34448523 |
T |
|
| Q |
373 |
aattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttc |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448524 |
aattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttc |
34448623 |
T |
|
| Q |
473 |
ttgctcaaactataaataaagcaaatacaaaaatatgtatacttcagttttgttagatactttcgatgtactttcatatgcagatacaaaatatgcagta |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448624 |
ttgctcaaactataaataaagcaaatacaaaaacatgtatacttcagttttgtaagatactttcgatgtactttcatatgcagatacaaaatatgcagta |
34448723 |
T |
|
| Q |
573 |
ccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgtttga |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34448724 |
ccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagttgaaaatccaatcgagaatctcgtcgtttga |
34448823 |
T |
|
| Q |
673 |
aaattctccaagtccaataaaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatccttca |
772 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448824 |
aaattctccaagtccaataaaagataatatttgaagcgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatccttca |
34448923 |
T |
|
| Q |
773 |
ctgcaccattttgat |
787 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34448924 |
ctgcaccattttgat |
34448938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 141 - 492
Target Start/End: Original strand, 34459525 - 34459876
Alignment:
| Q |
141 |
aaaatagccacttattataactgatcttgcttcttctactcactttgctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagtt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||| | |
|
|
| T |
34459525 |
aaaatagccacttattataactgatcttgcttcttctactcgcattgctcgatgcttataggatctacaagcagtgcagcaatgtaatctttgagcagat |
34459624 |
T |
|
| Q |
241 |
ctggttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaa |
340 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| || | ||| ||||||| | ||| | |||| ||||||||||||| ||||| |||| || ||| |
|
|
| T |
34459625 |
ctggatttgtgtatttatcctcaaagtcttcgtatatgaagtgagttcctcgcgcaaaattaagaatacattcaagcactggccttggaatgtggtgtaa |
34459724 |
T |
|
| Q |
341 |
cttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaa |
440 |
Q |
| |
|
|| || |||||||||||||| || |||| ||| || || |||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
34459725 |
ttttaggcactcttcattcataactctccataaatcttcaatctccttgagaatgagtttataagcctcttcttgtgatatgtcatattgcttcatgcaa |
34459824 |
T |
|
| Q |
441 |
cattccactgcagaagcaacatgcactctttcttgctcaaactataaataaa |
492 |
Q |
| |
|
|| || |||||||| ||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
34459825 |
caatcaactgcagaggcaacatgcaccctttcgtgctcaaactgtaaataaa |
34459876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 145 - 361
Target Start/End: Original strand, 34483660 - 34483876
Alignment:
| Q |
145 |
tagccacttattataactgatcttgcttcttctactcactttgctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagttctgg |
244 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||| | |||||||||||||||||||||||| | |||||||| |
|
|
| T |
34483660 |
tagccacttattataattgattttgcttcttctacttgcattgctcgattcttataggatctataagtagtgcaacaatgtaatctttcatcagttctgc |
34483759 |
T |
|
| Q |
245 |
ttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || | ||| |||||||| | ||||| ||||||||| | ||||| ||||| |||| |||| |
|
|
| T |
34483760 |
ttttgtgtatttatcctcaaagttttcgtatgtgaactctgttattcgtgccacattaagaataatttcaagcaccgaccttggaatgttttctatcttg |
34483859 |
T |
|
| Q |
345 |
agacactcttcattcat |
361 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
34483860 |
aggcactcttcattcat |
34483876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 571 - 785
Target Start/End: Original strand, 34485308 - 34485522
Alignment:
| Q |
571 |
taccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgttt |
670 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||| ||| |||| ||| ||||||||| |||| | || || |||||||| | | ||| | |||| |
|
|
| T |
34485308 |
taccttatgtgaggatatgtcatctgctagtctgccaatagctgatacagcctcgatgatttttgggtcactaaagatccaatcaaacaactctttgttt |
34485407 |
T |
|
| Q |
671 |
gaaaattctccaagtccaataaaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatcctt |
770 |
Q |
| |
|
||||||||||||| || | |||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34485408 |
gaaaattctccaaaccctagaaaacttaatatttgaagtgggagtgtagaagatataattccattagccttgtattcatcatatgttggaataaatcctt |
34485507 |
T |
|
| Q |
771 |
cactgcaccattttg |
785 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
34485508 |
cattgcaccattttg |
34485522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 246 - 483
Target Start/End: Original strand, 34473669 - 34473906
Alignment:
| Q |
246 |
tttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttga |
345 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| || | ||| |||||||| | |||| |||||||||| || | ||||||| ||||||||||| |
|
|
| T |
34473669 |
tttgtgtatttatcctcgtagttttcgtaggtgaactcggttattcgtgccacattaagaatacattcaagcacagggttggggatgtagtctaacttga |
34473768 |
T |
|
| Q |
346 |
gacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattc |
445 |
Q |
| |
|
| |||||||||| || || ||||| ||| || || |||||| |||| ||||| ||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
34473769 |
ggaactcttcatttatatccatccaaaaatcttcaatgtccttgttaatgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattc |
34473868 |
T |
|
| Q |
446 |
cactgcagaagcaacatgcactctttcttgctcaaact |
483 |
Q |
| |
|
||||| | |||||||||||| |||| |||||||||| |
|
|
| T |
34473869 |
aactgctgcagcaacatgcaccctttgctgctcaaact |
34473906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 569 - 783
Target Start/End: Original strand, 34473990 - 34474204
Alignment:
| Q |
569 |
agtaccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgt |
668 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||| ||| ||| |||| ||||| | ||||||||| | ||| ||| |||||| || | ||| || | |
|
|
| T |
34473990 |
agtactttatgcgaggatacatcatccgcgagtctgccaatagctgatacagcattaacgattgttggttcactggaaagccaatcaagcaactcttcat |
34474089 |
T |
|
| Q |
669 |
ttgaaaattctccaagtccaataaaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatcc |
768 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||||||| || |||||||||| ||||||||| || ||||||||||||||||| ||| ||| |
|
|
| T |
34474090 |
ttgaaaattctccaagtccaacgaaagatattattgaaagtgggattgtagaagatataagtccattagctttatattcatcatatgttggtataattcc |
34474189 |
T |
|
| Q |
769 |
ttcactgcaccattt |
783 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
34474190 |
ttcattgccccattt |
34474204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 729 - 785
Target Start/End: Original strand, 34460206 - 34460262
Alignment:
| Q |
729 |
atccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttg |
785 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
34460206 |
atccattaaccttgtattcatcatatgttggaatatatcctgctttgcaccattttg |
34460262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 495
Target Start/End: Original strand, 34483935 - 34483977
Alignment:
| Q |
453 |
gaagcaacatgcactctttcttgctcaaactataaataaagca |
495 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34483935 |
gaagcaacatgcactctttgctgctcaaactataaataaagca |
34483977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 5e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 141 - 493
Target Start/End: Complemental strand, 6132505 - 6132153
Alignment:
| Q |
141 |
aaaatagccacttattataactgatcttgcttcttctactcactttgctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagtt |
240 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| ||| |||| || || ||||||||||| | | || ||| ||||||||| ||||| |||| || |
|
|
| T |
6132505 |
aaaagagccacttattataactaattttgcttcacctattcacatttctaaatgcttataggttttagaatcagtttaacaatgtagtctttcagcaatt |
6132406 |
T |
|
| Q |
241 |
ctggttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaa |
340 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||| | |||| ||| | |||||| ||||||||| |||||| |
|
|
| T |
6132405 |
ccccatttgtgtatttatcctcaaagttttcgtatgtgaactcggctactcgcgccacattaacaatactttcgaccactgggcttgggatgcagtctaa |
6132306 |
T |
|
| Q |
341 |
cttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaa |
440 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||| || || |||||| || ||||| || ||| |||||| |||||||||||||||||| |
|
|
| T |
6132305 |
tttgagacactcttcattcataactatccaataatcttcgatctctttcagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaa |
6132206 |
T |
|
| Q |
441 |
cattccactgcagaagcaacatgcactctttcttgctcaaactataaataaag |
493 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
6132205 |
cattcaactgcagaagcaacatgcactctttgctgctcaaactgtaaacaaag |
6132153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 571 - 785
Target Start/End: Complemental strand, 6131418 - 6131203
Alignment:
| Q |
571 |
taccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgttt |
670 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| || ||| | | ||||| |||||||||||| | ||||||||||||||| || | ||| | |||| |
|
|
| T |
6131418 |
taccttatgtgaggatttgtcatcggtgagtctagcaatagctgctgcagcattgatgattgttgggtcgctgaaaatccaatcaagtaactctttgttt |
6131319 |
T |
|
| Q |
671 |
gaaaattctccaagtccaataaaagataat-atttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatcct |
769 |
Q |
| |
|
|||||||||||||| |||| |||||||| | | |||||||| | || |||||||||| ||||||||| |||||||||| || ||||||||| ||||| |
|
|
| T |
6131318 |
gaaaattctccaagaccaagaaaagatagtaagttgaagtgagagtgtagaagatataattccattagctttgtattcattgtaagttggaataaatcct |
6131219 |
T |
|
| Q |
770 |
tcactgcaccattttg |
785 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
6131218 |
tcattgcaccattttg |
6131203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 418 - 460
Target Start/End: Complemental strand, 6135884 - 6135842
Alignment:
| Q |
418 |
acatgtcatattgcttcatgcaacattccactgcagaagcaac |
460 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
6135884 |
acatgtcatattgcttcatgcaacattcaactgtagaagcaac |
6135842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 6135986 - 6135936
Alignment:
| Q |
311 |
ttcaagcactggtcttgggatgttgtctaacttgagacactcttcattcat |
361 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
6135986 |
ttcaagcactggtcttggtatgcaatctaacttgaggcactcttcattcat |
6135936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 1593287 - 1593371
Alignment:
| Q |
399 |
ttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaact |
483 |
Q |
| |
|
||||| || |||||| |||||||| ||||||||||||||||| || ||||| |||||||||||| | |||| ||||||||||| |
|
|
| T |
1593287 |
ttatatgcatcttctggtgacatgttgtattgcttcatgcaacactcaactgctgaagcaacatgctccctttgttgctcaaact |
1593371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University