View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4583-Insertion-3 (Length: 775)
Name: NF4583-Insertion-3
Description: NF4583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4583-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 2638264 - 2637878
Alignment:
| Q |
7 |
agttgattgatgaaattattttaagggcactttggtcctccttgttgggtcttccagttgttgtagcaagggcacacagctttgttaccataatagcctg |
106 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2638264 |
agttgattgatgaaattattttaagggcacttgggtcctccttgttgggtcttccagttgttgtagcaagggcacacagctttgttaccataatagcctg |
2638165 |
T |
|
| Q |
107 |
gtggtacacacaagcacttcctacaacacttctgacagaaaaacatgcaaggtttgtggtattgtgtctgtccacatctccttgagcattgggatgggca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2638164 |
gtggtacacacaagcacttcctacaacacttctgacagaaaaacatgcaaggtttgtggtattgtgtctgtccacatctccttgagcattgggatgggca |
2638065 |
T |
|
| Q |
207 |
ttctggtcatttcacattgccaagagacaaataaattattatttattgaaagtgaaaagnnnnnnnnnnngcagcagtgag-nnnnnnnnnctttaaca- |
304 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||| |
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| T |
2638064 |
ttctggtcatttcacattgccaagagacaaataaattgttatttattgaaagtgaaaa--------aaaagcagaagtgagttttttttttctttaacac |
2637973 |
T |
|
| Q |
305 |
--catcatcacattcaagacagtccaacagaaacagcttttactgaaacgattttgactatggtcaatgtaatggaccaagaagaatattttgtt |
397 |
Q |
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| T |
2637972 |
atcatcatcacattcaagacagttcaacagaatcagcttttactgaaacgattttgactatggtcaatgtaatggaccaagaagaatattttgtt |
2637878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 442 - 775
Target Start/End: Complemental strand, 2637832 - 2637501
Alignment:
| Q |
442 |
gttcataaaatatctttttgagagtagttatannnnnnncttaaaaaatagttgtcagccatctttataccattagatctagcccaaatgattagtattc |
541 |
Q |
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| T |
2637832 |
gttcataaaatatcttttttagagtagttatatttttttcttaaaaaatatttgtcagccatctttataccattagatctagcccaaatgattagtattc |
2637733 |
T |
|
| Q |
542 |
agtgtgttagtgttaaataaatcaaataaagtctattccaattggtaaaaataatttttattt--nnnnnnnnnnngtggtaaaaataatttgttttata |
639 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2637732 |
agtgtgttagtgttaaataaatcaaataaagtctattccaagtggtaaaaataatttttatttaaaaaaaaaaatagtggtaaaaataatttgttttata |
2637633 |
T |
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| Q |
640 |
tgcaagtggtaaaaataactaaactcttgcttaaataattttcaactagattat-aagtgttaacattacccacatgatttactttttctttttgagaca |
738 |
Q |
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| T |
2637632 |
tgcaagtggtaaaaataactaaactcttgcttaaataattttcaactacactatcaagtgttaacataacccacatgatttactttt--ctgttgagaca |
2637535 |
T |
|
| Q |
739 |
attgtttctttcttcttctattcagatgttgatacca |
775 |
Q |
| |
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||| ||||| |||||||||| |||||||||||||| |
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| T |
2637534 |
attatttct---ttcttctatttagatgttgatacca |
2637501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 35649511 - 35649611
Alignment:
| Q |
25 |
ttttaagggcactttggtcctccttgttgggtcttccagttgttgtagcaagggcacacagctttgttaccataatagcctggtggtacacacaagcact |
124 |
Q |
| |
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||||||||||| || |||||||| || ||||||||||||||||||||||||||| || ||||| ||||||||||| || || |||||||| |||| |
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| T |
35649511 |
ttttaagggcatttgggtcctccccttttggtcttccagttgttgtagcaagggcaaacctgcttgttgccataatagccaggaggcacacacaaacact |
35649610 |
T |
|
| Q |
125 |
t |
125 |
Q |
| |
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| |
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|
| T |
35649611 |
t |
35649611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 3730054 - 3729870
Alignment:
| Q |
27 |
ttaagggcactttggtcctccttgttgggtcttccagttgttgtagcaagggcacacagctttgttaccataatagcctggtggtacacacaagcacttc |
126 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| || || || ||||||||||| || |
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| T |
3730054 |
ttaagggcattttggtcctccttgttgagtcttccaattgttgtagcaagggcatacagctttgttcccataataccccgggggcacacacaagcatttg |
3729955 |
T |
|
| Q |
127 |
ctacaacacttctgacagaaaaacatgcaaggtttgtggtattgtgtctgtccacatctccttgagcattgggatgggcattctg |
211 |
Q |
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|||||||||| ||||| || |||||||| || ||||| ||||| || | | ||||||||||||||||| ||||||||||||| |
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| T |
3729954 |
ttacaacacttttgacaaaagaacatgcatggcttgtgatattgagtatttttgcatctccttgagcattgagatgggcattctg |
3729870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 13878873 - 13879047
Alignment:
| Q |
29 |
aagggcactttggtcctccttgttgggtcttccagttgttgtagcaagggcacacagctttgttaccataatagcctggtggtacacacaagcacttcct |
128 |
Q |
| |
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||||||| ||||||||||| | | ||||||||| |||||||| || || ||||||| |||||||||||||||||| || || ||||| | || || |
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| T |
13878873 |
aagggcattttggtcctccacgcttggtcttccaattgttgtaacagggacacacagatttgttaccataatagccaggaggaacacagagacatttggc |
13878972 |
T |
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| Q |
129 |
acaacacttctgacagaaaaacatgcaaggtttgtggtattgtgtctgtccacatctccttgagcattgggatgg |
203 |
Q |
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|||||| || |||||||| |||||||| || ||||| |||||||||||||||||||| |||| |||||| ||||| |
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| T |
13878973 |
acaacatttttgacagaagaacatgcatggcttgtgatattgtgtctgtccacatcttcttgtgcattgagatgg |
13879047 |
T |
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