View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4583_high_2 (Length: 406)
Name: NF4583_high_2
Description: NF4583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4583_high_2 |
 | |
|
| [»] scaffold1360 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 4010305 - 4009917
Alignment:
| Q |
12 |
atcatcaatctagtgttgaagaggttgagtaagcacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttac |
111 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010305 |
atcatcaatctattgttgaagaggttgagtaagcacccagttaactcaaaaggacttattggaattgacaaatcaattgcacatttgaattcattgttac |
4010206 |
T |
|
| Q |
112 |
aaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctga |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4010205 |
aaaaagagtcagaaaaggtcagtgtcattggaatttggggcatgggaagtattggcaagacaactattgcaggagaaatttttaaccaaaattgctctga |
4010106 |
T |
|
| Q |
212 |
atatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010105 |
atatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaagaacatttttgaaagaaaaacttttttctacactattagcagaa |
4010006 |
T |
|
| Q |
312 |
gatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010005 |
gatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
4009917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 4025535 - 4025150
Alignment:
| Q |
12 |
atcatcaatctagtgttgaagaggttgagtaagcacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttac |
111 |
Q |
| |
|
||||||||||| ||| |||| |||||||| |||||||| ||||| ||||||||||| ||||||||| |||| |||| || ||||| | || ||||||| |
|
|
| T |
4025535 |
atcatcaatcttgtgatgaaaaggttgagcaagcaccctattaacacaaaaggacttattggaattggcaaaccaatggctcatttagaatcgttgttac |
4025436 |
T |
|
| Q |
112 |
aaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctga |
211 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
4025435 |
gtcaagagtcagaaaaggttcgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctga |
4025336 |
T |
|
| Q |
212 |
atatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaa |
311 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4025335 |
atatgaaggttgttgttttttggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaa |
4025236 |
T |
|
| Q |
312 |
gatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatga |
397 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| ||||| || |||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4025235 |
gatgtgaaaatcgattcaccaaatgggttgtctagttatattgagagaaggattggccgtatgaaggtccttattgttcttgatga |
4025150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 4002608 - 4002220
Alignment:
| Q |
12 |
atcatcaatctagtgttgaagaggttgagtaagcacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttac |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||| || |||||||||| | |||||||||| |
|
|
| T |
4002608 |
atcatcaatcttgtgttgaagaggttgagtaagcaccctattaatacaaaaggacttattggaattggcaaaccagttgcacatttagaatcattgttac |
4002509 |
T |
|
| Q |
112 |
aaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctga |
211 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||| || ||||||||| |
|
|
| T |
4002508 |
gtcaacagttagaaaaggtccgtgtcattggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttttaaccgaagttgctctga |
4002409 |
T |
|
| Q |
212 |
atatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaa |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || ||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
4002408 |
atatgaaggtttttgttttttggaaaaggtaagtgaagaatcaggaaggcatggaataacatttttaaaagaaaagcttttttctacactattagcagaa |
4002309 |
T |
|
| Q |
312 |
gatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
400 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||| | ||| | |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4002308 |
gatgtgaaaattaattcaccaaatgggctgtctaattatattcagaggatgattggccgtatgaaggttcttattgttcttgatgatgt |
4002220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 26 - 400
Target Start/End: Complemental strand, 3987290 - 3986916
Alignment:
| Q |
26 |
gttgaagaggttgagtaagcacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaa |
125 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | ||||||||| || |
|
|
| T |
3987290 |
gttgaagatgttgagtaagcacccagttaactcaaaaggacttattggaattgacaaatcaattgcacatttaaattcattgttaaagaaagagtcacaa |
3987191 |
T |
|
| Q |
126 |
aaggtccgtgtcattggaatttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgtt |
225 |
Q |
| |
|
||||||||||| |||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
3987190 |
aaggtccgtgtgattggaatttggggtatgcctggcattggcaagacaactattgcagaagaaatttttaaccaaaatcgctctgaatatgatggttgtt |
3987091 |
T |
|
| Q |
226 |
gttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccg |
325 |
Q |
| |
|
||||||||| |||||| || || | ||| | |||||||||| || ||| ||||||| |||||| ||| | |||| || |||||||||||||| |
|
|
| T |
3987090 |
gttttttggcaaaggtgagtgaaaagttaaaattacatggaatagaatctttaaaagaaaccctttttactaaaatattggccgaagatgtgaaaattga |
3986991 |
T |
|
| Q |
326 |
ttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
400 |
Q |
| |
|
| | |||||| ||||||| | | ||| || |||| | ||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
3986990 |
tacaccaaataggttgtccagtgatattgagagacgaattggacgcatgaaggttcttatcattcttgatgatgt |
3986916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 55 - 398
Target Start/End: Complemental strand, 3801852 - 3801509
Alignment:
| Q |
55 |
actcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggggcat |
154 |
Q |
| |
|
||||| |||||||| ||||||| |||| | |||||||||||||||||||||||||| | |||||||| | |||||||||||| |||||||||||||| || |
|
|
| T |
3801852 |
actcagaaggacttattggaatggacagaccaattgcacatttgaattcattgttaaacaaagagtcgggaaaggtccgtgttattggaatttggggtat |
3801753 |
T |
|
| Q |
155 |
gggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaatta |
254 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||| |||||| ||||| ||| ||||||||| |||||||||||| || ||| || || | ||||| |
|
|
| T |
3801752 |
gggcggtattggcaagacaactattgcagaagaaatatttaaccaaaatcgctttgaatatgatggttgttgttttatgtcaaatgtgagtttggaatta |
3801653 |
T |
|
| Q |
255 |
ggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactg |
354 |
Q |
| |
|
||||| | |||||||||| ||| |||||||| |||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||| ||| | |
|
|
| T |
3801652 |
ggaaggcgtggaataacaatttaaaaagaaaagcttttttctaacctattaaatgaagatgtgaaaatcgattcaccaaatgggttgtctaataatattc |
3801553 |
T |
|
| Q |
355 |
tgagaaggattggtcgtatgaaggttcttattgttcttgatgat |
398 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
3801552 |
atagaaggattggccgtatgaaggttcttattgatcttgatgat |
3801509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 3954239 - 3954610
Alignment:
| Q |
12 |
atcatcaatctagtgttgaagaggttgagtaagcacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttac |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | || ||||| || ||||| | ||||||||| |||| || ||| |||||| | |||||||||| |
|
|
| T |
3954239 |
atcatcaatcttgtgttgaagaggttgagtaagtatcctattaacacagaaggatatattggaattgccaaaccagttggacatttagaatcattgttac |
3954338 |
T |
|
| Q |
112 |
aaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctga |
211 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||| |||| || ||||||||| |
|
|
| T |
3954339 |
gtcaaaagtcagaaaaggtttgtgtcattggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttataaccgaagttgctctga |
3954438 |
T |
|
| Q |
212 |
atatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaa |
311 |
Q |
| |
|
||||||||||||||||||||||| |||||| || || |||||||||| || | ||| | |||||||| ||||||||||||||| |
|
|
| T |
3954439 |
atatgaaggttgttgttttttggcaaaggtgagtgacgaattaggaaggcacg-----------------gaacagcttttttcaacactattagcagaa |
3954521 |
T |
|
| Q |
312 |
gatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
400 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3954522 |
gatgtgaaaatcgattcaccaaatgggttgtctaataatattcagagaaggattggccgtatgaaggttcttattgttcttgatgatgt |
3954610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 55 - 398
Target Start/End: Complemental strand, 4218909 - 4218566
Alignment:
| Q |
55 |
actcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggggcat |
154 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| | |||||||| | |||||||||||| |||||||||||||| || |
|
|
| T |
4218909 |
actcaaaaggacttattggaatggacaaaccaattgcacatttgaattcattgttaaacaaagagtcgggaaaggtccgtgttattggaatttggggtat |
4218810 |
T |
|
| Q |
155 |
gggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaatta |
254 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| | ||| || ||| ||| ||||||||||| |||||||||||| || ||| || || | |||| |
|
|
| T |
4218809 |
gggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgttttatgtcaaatgtgagtttgggatta |
4218710 |
T |
|
| Q |
255 |
ggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactg |
354 |
Q |
| |
|
||| | ||||||||||||||| ||||||| |||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||| ||| | |
|
|
| T |
4218709 |
caaagtcgtggaataacatttttaaaagaaatgcttttttctaacctattaaatgaagatgtgaaaatcgattcatcaaatgggttgtctaataatattc |
4218610 |
T |
|
| Q |
355 |
tgagaaggattggtcgtatgaaggttcttattgttcttgatgat |
398 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4218609 |
atagaaggattgaccgtatgaaggttcttattgttcttgatgat |
4218566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 48 - 397
Target Start/End: Complemental strand, 3810289 - 3809940
Alignment:
| Q |
48 |
ccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaattt |
147 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||| | ||||||||| |||||| || ||| || ||||||| |
|
|
| T |
3810289 |
ccagttaaatcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaattt |
3810190 |
T |
|
| Q |
148 |
ggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcga |
247 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |||| | ||| || ||| ||| ||||||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
3810189 |
ggggtatgggtggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaaggtaagtga |
3810090 |
T |
|
| Q |
248 |
gcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaat |
347 |
Q |
| |
|
| ||| |||||||||||| | ||| ||| | ||||||||||||| |||||| ||||||||||||||||| | | |||||| ||||| ||| | |
|
|
| T |
3810089 |
agagttaacaagacatggaatggattctttaaaaaataaacttttttctaaactattggcagaagatgtgaaaattgatacaccaaattggttgcctagt |
3809990 |
T |
|
| Q |
348 |
tatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatga |
397 |
Q |
| |
|
||| || ||| ||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
3809989 |
gatattgagaggcggattggccgcatgaaggttcttatcgttcttgatga |
3809940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 3817854 - 3817664
Alignment:
| Q |
51 |
gttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggg |
150 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
3817854 |
gttaactcaaaagaacttgttggaattgacaaaccaattgcggatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggg |
3817755 |
T |
|
| Q |
151 |
gcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggt |
241 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||| | ||||| | || || ||||| ||||||||||| ||||||||||| |
|
|
| T |
3817754 |
gcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggt |
3817664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 3932834 - 3933024
Alignment:
| Q |
51 |
gttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggg |
150 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
3932834 |
gttaaatcaaaaagacttgttggaattgacaaaccaattgcagatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggg |
3932933 |
T |
|
| Q |
151 |
gcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggt |
241 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||| | ||||| | || || ||||| ||||||||||| ||||||||||| |
|
|
| T |
3932934 |
gcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggt |
3933024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 95 - 241
Target Start/End: Original strand, 3919654 - 3919800
Alignment:
| Q |
95 |
tttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgggaggtattggcaagacaactattgcaggagaaattttt |
194 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
3919654 |
tttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatattt |
3919753 |
T |
|
| Q |
195 |
aactaaaattgctctgaatatgaaggttgttgttttttggaaaaggt |
241 |
Q |
| |
|
| | ||||| | || || ||||| ||||||||||| ||||||||||| |
|
|
| T |
3919754 |
agccaaaatcgttccgattatgatggttgttgtttcttggaaaaggt |
3919800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 3963129 - 3963267
Alignment:
| Q |
50 |
agttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttgg |
149 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||| || ||||||| | || ||||| ||| ||||||||||| | || ||||| |||| |||||| |
|
|
| T |
3963129 |
agttagctcaaaaggactcattggaattggaaaacaaactgcacatctaaagtcattattaagccaagagtcagaagatgttcgtgttgttgggatttgg |
3963228 |
T |
|
| Q |
150 |
ggcatgggaggtattggcaagacaactattgcaggagaa |
188 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
3963229 |
ggtatgggtggtattggcaagacaacccttgcagaagaa |
3963267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 13398259 - 13397871
Alignment:
| Q |
12 |
atcatcaatctagtgttgaagaggttgagtaagcacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttac |
111 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||| ||| ||||||||||||| | ||||||||| |
|
|
| T |
13398259 |
atcatcaagcttgtgttgaagaggttgaataagcaccctgttaaaacaaaaggacttattggaattgagaaagcaattgcacatttagaaccattgttac |
13398160 |
T |
|
| Q |
112 |
aaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctga |
211 |
Q |
| |
|
| |||||||||||||||| || || ||||| |||||||| |||||||||||||| |||||||||||||| | |||||||||||| ||| ||| ||||| |
|
|
| T |
13398159 |
atcaagagtcagaaaaggttcgcgtaattggtatttggggtatgggaggtattggaaagacaactattgccgaagaaatttttaatcaaatttgttctga |
13398060 |
T |
|
| Q |
212 |
atatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaa |
311 |
Q |
| |
|
||||||||| ||||||||||||| |||||| || || |||||||||| ||||||||| | ||||| |||||||| ||| |||||||||||||||||||| |
|
|
| T |
13398059 |
atatgaaggatgttgttttttggcaaaggtgagtgaagaattaggaaggcatggaatagcgtttttaaaagaaaagcttgtttctacactattagcagaa |
13397960 |
T |
|
| Q |
312 |
gatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
400 |
Q |
| |
|
||||| |||||| ||| ||||||||||| ||| ||||| | |||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
13397959 |
gatgtaaaaatcgattcatcaaatgggttgcctagttatattcagagaaggattggccatatgaaggttcttattgttcttgatgatgt |
13397871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1360 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold1360
Description:
Target: scaffold1360; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 1829 - 1967
Alignment:
| Q |
51 |
gttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggg |
150 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
1829 |
gttaaatcaaaaagacttgttggaattgacaaaccaattgcagatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggg |
1928 |
T |
|
| Q |
151 |
gcatgggaggtattggcaagacaactattgcaggagaaa |
189 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
1929 |
gcatgggcggtattggcaagacaactattgcagaagaaa |
1967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 7069266 - 7069135
Alignment:
| Q |
57 |
tcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgg |
156 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||| ||| | | | |||||||||||| |||||| || | || |||| |||||||||||||| ||| |
|
|
| T |
7069266 |
tcaaaaggacttattggaattggcaaacaaatttcacgtgtagaatcattgttacaagtagagtcgcaagatgttcgtgctattggaatttggggtatga |
7069167 |
T |
|
| Q |
157 |
gaggtattggcaagacaactattgcaggagaa |
188 |
Q |
| |
|
| |||||||| |||||||||||||||| |||| |
|
|
| T |
7069166 |
gtggtattggaaagacaactattgcagaagaa |
7069135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 7092901 - 7092860
Alignment:
| Q |
360 |
aggattggtcgtatgaaggttcttattgttcttgatgatgtc |
401 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
7092901 |
aggattcgtcgtatgaaggttcttattgttcttgacgatgtc |
7092860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 7098699 - 7098598
Alignment:
| Q |
50 |
agttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttgg |
149 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||| |||||||||| | | |||||||||||| ||||||| || | || |||| |||||||||||| |
|
|
| T |
7098699 |
agttaattcaaaaggacttgatggaattgaaaaacaaattgcacatgtagaatcattgttacaagtagagtcacaagatgttcgtgctattggaatttgg |
7098600 |
T |
|
| Q |
150 |
gg |
151 |
Q |
| |
|
|| |
|
|
| T |
7098599 |
gg |
7098598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 7081828 - 7081698
Alignment:
| Q |
50 |
agttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttgg |
149 |
Q |
| |
|
|||||| ||||||||| || |||||||||| ||| ||| || || || | |||||||||||| ||||||| || | || |||| |||||||||||| |
|
|
| T |
7081828 |
agttaattcaaaaggagttattggaattgaaaaacaaatatcatatgtggaatcattgttacaagtagagtcacaagatgttcgtgctattggaatttgg |
7081729 |
T |
|
| Q |
150 |
ggcatgggaggtattggcaagacaactattg |
180 |
Q |
| |
|
|| ||| | |||||||| ||||||| ||||| |
|
|
| T |
7081728 |
gggatgagtggtattggaaagacaattattg |
7081698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 7012932 - 7012977
Alignment:
| Q |
356 |
gagaaggattggtcgtatgaaggttcttattgttcttgatgatgtc |
401 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
7012932 |
gagaaggctttgtcgtatgaaggttcttgttgttcttgacgatgtc |
7012977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 401
Target Start/End: Original strand, 7023416 - 7023445
Alignment:
| Q |
372 |
atgaaggttcttattgttcttgatgatgtc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7023416 |
atgaaggttcttattgttcttgatgatgtc |
7023445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 401
Target Start/End: Complemental strand, 7075448 - 7075419
Alignment:
| Q |
372 |
atgaaggttcttattgttcttgatgatgtc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7075448 |
atgaaggttcttattgttcttgatgatgtc |
7075419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 400
Target Start/End: Original strand, 7036514 - 7036542
Alignment:
| Q |
372 |
atgaaggttcttattgttcttgatgatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7036514 |
atgaaggttcttattgttcttgatgatgt |
7036542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 42859033 - 42858991
Alignment:
| Q |
134 |
tgtcattggaatttggggcatgggaggtattggcaagacaact |
176 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
42859033 |
tgtcattggcatttggggcatgggcggtattgggaagacaact |
42858991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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