View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4583_low_4 (Length: 400)
Name: NF4583_low_4
Description: NF4583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4583_low_4 |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0894 (1 HSPs) |
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| [»] scaffold0716 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 23348595 - 23348258
Alignment:
| Q |
15 |
tcagaatcaacgtttgaatcagtattccaaattggtttcgaatgatatccaatccaataaaataaaaaccgattaagcagaagc-aaaaatagaaatccc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
23348595 |
tcagaatcaacgtttgaatcagtattccaaattggtttcgaatgatatccaatctaataaaataaaaaccgattaatcagaagccaaaaatagaaatccc |
23348496 |
T |
|
| Q |
114 |
atgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtattgaactttgataatggaacttacaacaagacaa--caatttttatatca |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
23348495 |
atgagtggttttaattttgaaaccaaatcaaaagca-atatagatcagtattgaattttgataatggaacttacaacaaaacaaaacaatttttatatca |
23348397 |
T |
|
| Q |
212 |
aatacgacttaaaaaatctgtccatgagaaagctaaatcaaagacaaaatattaacccactccatggacaaacagaccgtgaagcatagtgattaaagga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23348396 |
aatacgacttaaaaaatctgtccatgagaaagctaaatcaaagacaaaatattaacccactccatggacaaacagaccgtgaagcataatgattaaagga |
23348297 |
T |
|
| Q |
312 |
aagataaaggaactctaccaccttaagaggtgcaccgat |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
23348296 |
aagataaaggaactctaccaccttaagaggtgcaccgat |
23348258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 40934188 - 40933951
Alignment:
| Q |
15 |
tcagaatcaacgtttgaatcagtattccaaattggtttcgaatgatatccaatccaataaaataaaaaccgattaagcagaagcaaaaatagaa-atccc |
113 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||| ||||||||||||||| ||||| |||||| ||||| ||||||||||||| || ||||| |
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| T |
40934188 |
tcagaatcaacgcttgactcagtatttcaaattggtgtcgaatgatatccaac-----aaaattaaaaccaattaatcagaagcaaaaattaaagatccc |
40934094 |
T |
|
| Q |
114 |
atgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtattgaactttgataatggaacttacaacaagac--aacaatttttatatca |
211 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||| | | ||||||| | | |||||||| |||||| | ||| ||||||| ||||| |
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| T |
40934093 |
atgagtggttttaatttggaaactaaatcaaaggcacatataggttaatattgaatctcggtaatggaatttacaaaaggacaaaacaattcagctatca |
40933994 |
T |
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| Q |
212 |
aatacgactt--aaaaaatctgtccatgagaaagctaaatcaa |
252 |
Q |
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|||||||||| ||||||| |||||||||||||| |||||||| |
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| T |
40933993 |
aatacgactttaaaaaaatatgtccatgagaaagataaatcaa |
40933951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 11233185 - 11232947
Alignment:
| Q |
15 |
tcagaatcaacgtttgaatcagtattccaaattggtttcgaatgatatccaatccaataaaataaaaaccgattaagcagaagcaaaaatagaa-atccc |
113 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||| ||||||||||||||| ||||| |||||| ||||| ||||||||||||| || ||||| |
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| T |
11233185 |
tcagaatcaacgcttgactcagtatttcaaattggtgtcgaatgatatccaac-----aaaattaaaaccaattaatcagaagcaaaaattaaagatccc |
11233091 |
T |
|
| Q |
114 |
atgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtattgaactttgataatggaacttacaacaagac--aacaatttttatatca |
211 |
Q |
| |
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||||||||||||||||| ||||| |||||||| ||||||||| | | ||||||| | | |||||||| |||||| | ||| ||||||| ||||| |
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| T |
11233090 |
atgagtggttttaatttggaaactaaatcaaaggcacatataggttaatattgaatctcggtaatggaatttacaaaaggacaaaacaattcagctatca |
11232991 |
T |
|
| Q |
212 |
aatacgactt---aaaaaatctgtccatgagaaagctaaatcaa |
252 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| |||||||| |
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| T |
11232990 |
aatacgacttttcaaaaaatacgtccatgagaaagataaatcaa |
11232947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 113 - 252
Target Start/End: Complemental strand, 246065 - 245929
Alignment:
| Q |
113 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtattgaactttgataatggaacttacaacaagacaa--caatttttatatc |
210 |
Q |
| |
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|||||||||||||||||| ||||| |||||||| ||||||||| ||| |||| |||||||||||||||||||| ||||| ||||| | ||| |
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| T |
246065 |
catgagtggttttaatttggaaactaaatcaaatgcacatataggtcaatatt------tgataatggaacttacaacaggacaaaacaattctgccatc |
245972 |
T |
|
| Q |
211 |
aaatacgactt-aaaaaatctgtccatgagaaagctaaatcaa |
252 |
Q |
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||||||||||| ||||||| |||||||||||||| |||||||| |
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| T |
245971 |
aaatacgactttaaaaaatatgtccatgagaaagataaatcaa |
245929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 37282133 - 37282269
Alignment:
| Q |
113 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtattgaactttgataatggaacttacaacaagacaa--caatttttatatc |
210 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||| ||| |||| ||||||||||||||||||| ||||| ||||| | ||| |
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| T |
37282133 |
catgagtggttttaatttggaaactaaatcaaatgcacatataggtcaatatt------tgataatggaacttacaacgggacaaaacaattctgccatc |
37282226 |
T |
|
| Q |
211 |
aaatacgactt-aaaaaatctgtccatgagaaagctaaatcaa |
252 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| |||||||| |
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| T |
37282227 |
aaatacgactttaaaaaatatgtccatgagaaagataaatcaa |
37282269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 7314022 - 7314148
Alignment:
| Q |
113 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtattgaactttgataatggaacttacaaca--agacaacaatttttatatc |
210 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||| ||| || |||||||||||||||||||||| | | ||||||| | ||| |
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| T |
7314022 |
catgagtggttttaatttggaaactaaatcaaaggcacatataggtcaata------tttgataatggaacttacaacaggataaaacaattatgccatc |
7314115 |
T |
|
| Q |
211 |
aaatacgactt-aaaaaatctgtccatgagaaa |
242 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7314116 |
aaatacgacttcaaaaaatatgtccatgagaaa |
7314148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0894 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0894
Description:
Target: scaffold0894; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 76 - 4
Alignment:
| Q |
113 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtattgaactttgataatggaacttacaaca |
191 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||| ||| || |||||||||||||||||||||| |
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|
| T |
76 |
catgagtggttttaatttggaaactaaatcaaaggcacatataggtcaata------tttgataatggaacttacaaca |
4 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0716 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 7321 - 7249
Alignment:
| Q |
113 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtattgaactttgataatggaacttacaaca |
191 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
7321 |
catgagtggttttaatttggaaactaaatcaaaggcacatataggtcaata------tttgataatggaacttacaaca |
7249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 11136541 - 11136613
Alignment:
| Q |
113 |
catgagtggttttaattttgaaaccaaatcaaaatcacatatagatcagtattgaactttgataatggaacttacaaca |
191 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||| ||| || |||||||||||||||||||||| |
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|
| T |
11136541 |
catgagtggttttaatttggaaactaaatcaaaggcacatataggtcaata------tttgataatggaacttacaaca |
11136613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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