View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4583_low_8 (Length: 216)
Name: NF4583_low_8
Description: NF4583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4583_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 36766897 - 36767106
Alignment:
| Q |
1 |
atgatcctataagtacctctccacaggaaactccaaccgataatttccaggccacacccttcaagcgtaatcgaccggagatttcgagttcatcaactgc |
100 |
Q |
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| T |
36766897 |
atgatcctataaggaactctccacaggaaactccaaccaatcatttccaggccacacccttcaagcgtaatcgaccagagatttcgagttcatcaactgc |
36766996 |
T |
|
| Q |
101 |
gcctcctgtgcaatattctagaaggaatctgcctagttcttctggaggtgtgggcatggatgatatgtggacatcattttttactgagatcagtggcagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36766997 |
acctcctgtgcaatattctagaaggaatctgcctagttcttctggaggtgtgggcatggatgatatgtggacatcattttttactgagatcagtggcagt |
36767096 |
T |
|
| Q |
201 |
ggtgatgatg |
210 |
Q |
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|||||||||| |
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| T |
36767097 |
ggtgatgatg |
36767106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 36748455 - 36748662
Alignment:
| Q |
1 |
atgatcctataagtacctctccacaggaaactccaaccgataatttccaggccacacccttcaagcgtaatcgaccggagatttcgagttcatcaactgc |
100 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| || |||| |||||||||||| |||||||| |||||||||||||||| ||| |||||||||| |
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| T |
36748455 |
atgatcctataaggaactctccacaggaaactccaaccaattattttcaggccacacccctcaagcgtcatcgaccggagatttcaagtacatcaactgc |
36748554 |
T |
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| Q |
101 |
gcctcctgtgcaatattctagaaggaatctgcctagttcttctggaggtgtgggcatggatgatatgtggacatcattttttactgagatcagtggcagt |
200 |
Q |
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||||||| |||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36748555 |
gcctcctttgcaatattctagaaggagtctgtctagttcttttggaggtgtgggcatggatgatatgtggacatcattttttactgagatcagtgggaga |
36748654 |
T |
|
| Q |
201 |
ggtgatga |
208 |
Q |
| |
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|||||||| |
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| T |
36748655 |
ggtgatga |
36748662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 36755965 - 36756018
Alignment:
| Q |
154 |
gcatggatgatatgtggacatcattttttactgagatcagtggcagtggtgatg |
207 |
Q |
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|||| ||||||||||||||||||| ||||||||||||| |||| || ||||||| |
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| T |
36755965 |
gcatcgatgatatgtggacatcatattttactgagatcggtggtagcggtgatg |
36756018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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