View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4584-Insertion-1 (Length: 1035)

Name: NF4584-Insertion-1
Description: NF4584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4584-Insertion-1
NF4584-Insertion-1
[»] chr8 (30 HSPs)
chr8 (50-1001)||(39699035-39699974)
chr8 (685-897)||(39699867-39700084)
chr8 (150-402)||(39708329-39708574)
chr8 (7-72)||(39698967-39699032)
chr8 (652-763)||(31313300-31313411)
chr8 (646-758)||(40505305-40505417)
chr8 (652-763)||(6530299-6530410)
chr8 (639-740)||(35865148-35865249)
chr8 (637-733)||(8114346-8114442)
chr8 (652-730)||(21372469-21372547)
chr8 (682-761)||(26014385-26014464)
chr8 (460-545)||(7637591-7637675)
chr8 (658-763)||(31592409-31592514)
chr8 (252-307)||(39698218-39698273)
chr8 (639-721)||(7774631-7774713)
chr8 (639-721)||(7791278-7791360)
chr8 (639-721)||(7811862-7811944)
chr8 (671-759)||(5493362-5493450)
chr8 (652-728)||(41720141-41720217)
chr8 (672-735)||(45244700-45244763)
chr8 (664-758)||(14042052-14042146)
chr8 (652-726)||(42685739-42685813)
chr8 (652-741)||(34576703-34576792)
chr8 (652-716)||(17920221-17920285)
chr8 (683-758)||(8769086-8769161)
chr8 (637-748)||(13948954-13949065)
chr8 (638-709)||(22941917-22941988)
chr8 (903-950)||(35865149-35865196)
chr8 (447-532)||(18181760-18181846)
chr8 (652-733)||(15067595-15067676)
[»] chr4 (30 HSPs)
chr4 (650-762)||(42051167-42051279)
chr4 (637-760)||(27918378-27918501)
chr4 (652-760)||(36989829-36989938)
chr4 (652-760)||(41459943-41460052)
chr4 (637-709)||(34936394-34936466)
chr4 (637-762)||(22019383-22019508)
chr4 (664-763)||(1961603-1961702)
chr4 (666-752)||(30033589-30033674)
chr4 (652-760)||(564168-564276)
chr4 (652-732)||(1008953-1009033)
chr4 (652-760)||(24940627-24940734)
chr4 (637-761)||(28675727-28675851)
chr4 (667-763)||(50297709-50297805)
chr4 (652-759)||(9791305-9791412)
chr4 (672-758)||(26546007-26546094)
chr4 (637-727)||(38705774-38705864)
chr4 (652-757)||(45249947-45250052)
chr4 (664-735)||(36937484-36937555)
chr4 (652-758)||(14138973-14139079)
chr4 (652-732)||(40311735-40311815)
chr4 (652-732)||(40321811-40321891)
chr4 (637-733)||(54719664-54719760)
chr4 (894-972)||(27918424-27918503)
chr4 (704-763)||(29508635-29508694)
chr4 (637-700)||(29508720-29508783)
chr4 (670-733)||(53850139-53850202)
chr4 (461-531)||(37861179-37861249)
chr4 (664-730)||(39260023-39260089)
chr4 (475-532)||(16692104-16692161)
chr4 (894-970)||(42051200-42051277)
[»] chr7 (21 HSPs)
chr7 (652-762)||(32786784-32786894)
chr7 (638-741)||(31399293-31399396)
chr7 (638-759)||(26081016-26081137)
chr7 (638-759)||(26104803-26104924)
chr7 (664-769)||(34964029-34964134)
chr7 (664-740)||(28337220-28337296)
chr7 (644-759)||(24330976-24331095)
chr7 (656-730)||(25119764-25119838)
chr7 (652-758)||(47390573-47390679)
chr7 (664-761)||(2741460-2741557)
chr7 (703-752)||(5083085-5083134)
chr7 (894-970)||(32786786-32786863)
chr7 (461-545)||(21212717-21212800)
chr7 (667-726)||(39837473-39837532)
chr7 (468-531)||(47375857-47375920)
chr7 (667-733)||(2033633-2033699)
chr7 (652-741)||(27075034-27075123)
chr7 (652-741)||(27203190-27203279)
chr7 (693-758)||(37394347-37394412)
chr7 (463-524)||(42244471-42244532)
chr7 (652-729)||(47991000-47991077)
[»] chr6 (12 HSPs)
chr6 (637-763)||(3787421-3787547)
chr6 (652-764)||(30249136-30249248)
chr6 (469-545)||(357170-357245)
chr6 (639-725)||(1065619-1065705)
chr6 (687-763)||(14215159-14215235)
chr6 (658-762)||(30438430-30438534)
chr6 (664-721)||(2614370-2614427)
chr6 (667-759)||(11659252-11659344)
chr6 (903-950)||(3787445-3787492)
chr6 (652-730)||(6469607-6469685)
chr6 (665-735)||(7632691-7632759)
chr6 (894-932)||(2614389-2614427)
[»] chr1 (27 HSPs)
chr1 (639-741)||(37316619-37316720)
chr1 (652-761)||(11017999-11018108)
chr1 (652-762)||(16394819-16394929)
chr1 (653-763)||(25366728-25366838)
chr1 (652-759)||(1035565-1035672)
chr1 (671-759)||(5799815-5799903)
chr1 (637-733)||(16583178-16583274)
chr1 (652-759)||(31635438-31635545)
chr1 (469-531)||(34462746-34462808)
chr1 (652-740)||(15281371-15281459)
chr1 (666-758)||(29033009-29033101)
chr1 (894-950)||(5799827-5799883)
chr1 (903-970)||(16394821-16394889)
chr1 (647-759)||(28490551-28490662)
chr1 (638-757)||(26176352-26176471)
chr1 (461-531)||(18919274-18919344)
chr1 (904-950)||(37316672-37316718)
chr1 (637-726)||(4084728-4084817)
chr1 (664-760)||(36012485-36012581)
chr1 (438-531)||(1640246-1640340)
chr1 (903-941)||(16583181-16583219)
chr1 (659-733)||(41884683-41884757)
chr1 (647-732)||(11420837-11420922)
chr1 (903-950)||(11018039-11018086)
chr1 (664-738)||(50014660-50014733)
chr1 (638-762)||(31262552-31262677)
chr1 (652-733)||(42066647-42066728)
[»] chr3 (31 HSPs)
chr3 (642-762)||(33791473-33791593)
chr3 (652-758)||(25134144-25134250)
chr3 (652-763)||(47849981-47850092)
chr3 (652-761)||(47006591-47006700)
chr3 (638-733)||(4539879-4539974)
chr3 (652-761)||(39430255-39430364)
chr3 (638-761)||(47499415-47499538)
chr3 (652-762)||(18029982-18030092)
chr3 (664-754)||(54787868-54787958)
chr3 (637-759)||(26040814-26040934)
chr3 (652-741)||(48192624-48192713)
chr3 (461-545)||(39956193-39956275)
chr3 (638-761)||(13637885-13638008)
chr3 (652-759)||(19961131-19961237)
chr3 (647-730)||(42891044-42891126)
chr3 (642-732)||(37919182-37919272)
chr3 (665-762)||(17587050-17587147)
chr3 (655-736)||(28787690-28787771)
chr3 (690-761)||(27117956-27118027)
chr3 (642-735)||(36456656-36456747)
chr3 (494-532)||(39625150-39625188)
chr3 (652-733)||(44418475-44418556)
chr3 (665-734)||(53741346-53741415)
chr3 (664-740)||(25102050-25102125)
chr3 (652-688)||(33466008-33466044)
chr3 (652-740)||(45628327-45628415)
chr3 (898-941)||(19961160-19961203)
chr3 (670-701)||(53458805-53458836)
chr3 (905-970)||(33791475-33791541)
chr3 (898-947)||(28787690-28787739)
chr3 (664-721)||(51325541-51325598)
[»] chr2 (32 HSPs)
chr2 (665-761)||(25626319-25626415)
chr2 (667-763)||(37230554-37230650)
chr2 (637-740)||(32294552-32294655)
chr2 (652-759)||(44068839-44068946)
chr2 (652-769)||(25626460-25626577)
chr2 (637-761)||(14275751-14275874)
chr2 (652-738)||(2290278-2290364)
chr2 (652-761)||(20061112-20061221)
chr2 (652-761)||(39420250-39420359)
chr2 (660-761)||(2641441-2641542)
chr2 (637-733)||(30549082-30549178)
chr2 (652-775)||(39364402-39364526)
chr2 (637-752)||(29877057-29877172)
chr2 (652-758)||(2319151-2319256)
chr2 (652-738)||(9950287-9950373)
chr2 (637-763)||(36284959-36285084)
chr2 (652-758)||(43451714-43451820)
chr2 (652-717)||(13349702-13349767)
chr2 (668-759)||(2889103-2889194)
chr2 (638-759)||(13487746-13487866)
chr2 (652-727)||(41890043-41890118)
chr2 (664-730)||(7743794-7743860)
chr2 (664-733)||(7061547-7061616)
chr2 (638-724)||(15135370-15135458)
chr2 (637-760)||(15079822-15079947)
chr2 (671-719)||(34141640-34141688)
chr2 (903-941)||(25626346-25626384)
chr2 (894-950)||(20061143-20061199)
chr2 (666-714)||(33278787-33278835)
chr2 (664-762)||(409892-409991)
chr2 (698-733)||(44107510-44107545)
chr2 (642-700)||(30944247-30944305)
[»] chr5 (18 HSPs)
chr5 (664-759)||(41144650-41144745)
chr5 (638-716)||(16627302-16627380)
chr5 (653-733)||(10523678-10523758)
chr5 (652-760)||(26105005-26105113)
chr5 (638-733)||(554331-554426)
chr5 (652-731)||(29557497-29557576)
chr5 (680-738)||(40845808-40845866)
chr5 (461-531)||(523644-523714)
chr5 (647-740)||(967579-967673)
chr5 (652-740)||(43340295-43340383)
chr5 (664-763)||(14547816-14547915)
chr5 (667-768)||(24519472-24519574)
chr5 (670-763)||(2987480-2987572)
chr5 (904-949)||(40845808-40845853)
chr5 (461-532)||(6825443-6825514)
chr5 (894-941)||(10523681-10523728)
chr5 (670-741)||(41063864-41063935)
chr5 (478-531)||(30246-30299)
[»] scaffold0116 (2 HSPs)
scaffold0116 (639-736)||(3006-3103)
scaffold0116 (639-761)||(6047-6173)
[»] scaffold0181 (1 HSPs)
scaffold0181 (638-736)||(10788-10886)
[»] scaffold0482 (1 HSPs)
scaffold0482 (639-721)||(553-635)
[»] scaffold0328 (2 HSPs)
scaffold0328 (670-740)||(12423-12493)
scaffold0328 (894-950)||(12424-12480)
[»] scaffold0542 (1 HSPs)
scaffold0542 (670-761)||(4510-4601)
[»] scaffold0024 (1 HSPs)
scaffold0024 (447-531)||(33248-33333)
[»] scaffold0003 (1 HSPs)
scaffold0003 (666-763)||(321967-322054)


Alignment Details
Target: chr8 (Bit Score: 616; Significance: 0; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 50 - 1001
Target Start/End: Original strand, 39699035 - 39699974
Alignment:
Q  50 tgtacattgtctctgttaactgatcttatgctcgcggaaacttagttaatcaaattttgtcctctaattatggtgaaaccaatannnnnnnnnnnnnnnn 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  39699035 tgtacattgttcctgttaactgatcttatgctcgcggaaacttagttaatcaaattttgtcctctaattatggtgaaaccaatattttttttaagttttt 39699134  T
Q  150 -gaaataaaattaaatacattcccttttgtacattaaatatgaattttggtttaacgaatatatttcaatttctttttgcacattccttttcccgtgtca 248  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39699135 tgaaataaaattagatacattcccttttgtacattaaatatgaattttggtttaacgaatatatttcaatttctttttgcacattccttttcccgtgtca 39699234  T
Q  249 aggtaaataggctgtataaatgagtaatataattttggaaggaattggaaaggtaatatgaaatacttcgtactatgagaaatatgtatatttatggaca 348  Q
    ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39699235 aggtaaagaggctgtataaatgagtaatataattttggaagg-tttggaaaggtaatatgaaatacttcgtactatgagaaatatgtat-tttatggaca 39699332  T
Q  349 atcagatttcatatttggaataacataattggaagcaagaaatgttatagaaaaataatggaaaaataatggaaatgaatacattttattttatggataa 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||| ||    
T  39699333 atcagatttcatatttggaataacataattggaagcaagaaatgttata-----------gaaaaataatggaaatgaatacattttattttatggagaa 39699421  T
Q  449 tgctaacttgttccttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaaacgttacaaacttannn 548  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  39699422 tgctaacttgttcctttaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaaacgttacaaactta-tt 39699520  T
Q  549 nnnncaattcaaaacttaaggtttaattcnnnnnnnnggggtcatgttatgttgtgtctaagggtgcatgtcaaagaacccnnnnnnngcaattttacat 648  Q
        |||||||||||||||||||||||||         ||||||||||| |||||||||||||| | ||||||||||||||       ||||||||||||    
T  39699521 ttttcaattcaaaacttaaggtttaattctttttttttgggtcatgttaagttgtgtctaagggcgtatgtcaaagaaccc-aaaaaagcaattttacat 39699619  T
Q  649 tataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaa 748  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  39699620 tataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacgtatatttttataataaactccttaacatgtgtccttgaagacacaa 39699719  T
Q  749 gttagcatttgccttcttttattgttatttaacttgtgcatttaatgtcttgaaaggttacaaacttannnnnnncaattcaaaaccatggtttaattcn 848  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||     
T  39699720 gttagcatttgccttcttttattgatatttaacttgtgcatttaatgtcttgaaaggttacaaacttatttttttcaattcaaaaccattgtttaattct 39699819  T
Q  849 nnnnnnnggtgatgctaacttgtgcccacatgacctttgttttacaatgcacagcttttgatacgtatatttttataataagttccttaacatttgtcct 948  Q
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| || |||    
T  39699820 tttttttggtgatgctaacttgtgcccacatgacctttgttttacactgcacaacttttgatacgtatatttttataataagctccttaacatctgccct 39699919  T
Q  949 tggagacac-agttagcatttg-cttcttttattgatatttaacttgtacattca 1001  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||    
T  39699920 tggagacacaagttagcatttgccttcttttattgatatttaacttgtgcattca 39699974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 685 - 897
Target Start/End: Original strand, 39699867 - 39700084
Alignment:
Q  685 tgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgccttcttttattgttatttaacttg 784  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||| || ||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  39699867 tgcacaacttttgatacgtatatttttataataagctccttaacatctgcccttggagacacaagttagcatttgccttcttttattgatatttaacttg 39699966  T
Q  785 tgcatttaatgtcttgaaaggttacaaactta--nnnnnnncaattcaaaaccatggtttaa---ttcnnnnnnnnggtgatgctaacttgtgcccacat 879  Q
    |||||| ||| |||| ||||||||||||||||         |||||||||||||||||||||   ||          |||||||| ||||||||||||||    
T  39699967 tgcattcaatatcttaaaaggttacaaacttatttttttttcaattcaaaaccatggtttaatttttttttgtttttgtgatgcttacttgtgcccacat 39700066  T
Q  880 gacctttgttttacaatg 897  Q
    ||||||||||||||||||    
T  39700067 gacctttgttttacaatg 39700084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 150 - 402
Target Start/End: Original strand, 39708329 - 39708574
Alignment:
Q  150 gaaataaaattaaatacattcccttttgtacattaaatatgaattttggtt-taacgaatatatttcaatttctttttgcacattccttttcccgtgtca 248  Q
    ||||||||||||||||| || | ||||||||||||||| |||| || | || ||| ||  ||||||||||||| |||||||| ||||||||||| ||||     
T  39708329 gaaataaaattaaatacgtttcgttttgtacattaaatttgaacttggtttataatga--atatttcaatttccttttgcacgttccttttcccatgtcg 39708426  T
Q  249 aggtaaataggctgtataaatgagtaatataattttggaaggaattggaaaggtaatatgaaatacttcgtactatgagaaatatgtatatttatggaca 348  Q
    |  ||| || |||| ||||||||||||||||| || ||||||||||| |||| |||||||| ||||    ||||||  ||||||   |||||||||||||    
T  39708427 acataagtaagctggataaatgagtaatataaattgggaaggaattgcaaagataatatgagatac----tactatatgaaata--aatatttatggaca 39708520  T
Q  349 atcagatttcatatttggaataacataattggaagcaagaaatgttatagaaaa 402  Q
    || ||||||| | ||||||||||||||| |||||||  ||||||||||||||||    
T  39708521 atgagatttcgtttttggaataacataaatggaagctcgaaatgttatagaaaa 39708574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 39698967 - 39699032
Alignment:
Q  7 atataaaaccttcctctcaagtaaaaacttttggatccgtcagtgtacattgtctctgttaactga 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39698967 atataaaaccttcctctcaagtaaaaacttttggatccgtcagtgtacattgtctctgttaactga 39699032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 652 - 763
Target Start/End: Complemental strand, 31313411 - 31313300
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    |||||||||||  | ||||||||||||||| |||||| |||||||||||| ||||||| |||||| | |||||||||||||| ||||||   ||||||||    
T  31313411 aaaacataatatgtcaacttttaaaaagttgaatgcatgacttttgatacgtatatttctataatgacttccttaacatgtgcccttgagggcacaagtt 31313312  T
Q  752 agcatttgcctt 763  Q
    ||||||||||||    
T  31313311 agcatttgcctt 31313300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 646 - 758
Target Start/End: Original strand, 40505305 - 40505417
Alignment:
Q  646 cattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaaca 745  Q
    ||||| |||| || ||| |||||||||||| ||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||||  | ||||  |||    
T  40505305 cattaaaaaatatgatattttaacttttaagaagttgaatgcacgacttttgatatatatattttcataatgagttccttaacatgtacctttgaggaca 40505404  T
Q  746 caagttagcattt 758  Q
    |||||||||||||    
T  40505405 caagttagcattt 40505417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 652 - 763
Target Start/End: Complemental strand, 6530410 - 6530299
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    |||||||||||  || |||||||| ||||| |||||||||||||| || | ||||||| | ||||||||||||||||||||| ||||||   ||||||||    
T  6530410 aaaacataatatattgacttttaagaagttgaatgcacgactttttatgcttatatttctttaataagttccttaacatgtgcccttgagggcacaagtt 6530311  T
Q  752 agcatttgcctt 763  Q
    ||||||||||||    
T  6530310 agcatttgcctt 6530299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 639 - 740
Target Start/End: Complemental strand, 35865249 - 35865148
Alignment:
Q  639 aattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcctt 738  Q
    |||||||||||| |||| |||||| |||||||||||||||||| | | | ||||||||||||  ||||||| |||||||||||||||||||| || ||||    
T  35865249 aattttacattagaaaatataatattttaacttttaaaaagttgactacgcgacttttgatatgtatatttctataataagttccttaacatatgccctt 35865150  T
Q  739 ga 740  Q
    ||    
T  35865149 ga 35865148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 637 - 733
Target Start/End: Original strand, 8114346 - 8114442
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    |||||||| ||||| ||||||| ||| ||||| ||||||||| || | |||||||||||| ||||||||||||||||||| |||| |||||||||||    
T  8114346 gcaattttgcattaaaaaacatgataatttaatttttaaaaaattgactgcacgacttttaatacatatatttttataatgagtttcttaacatgtg 8114442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 652 - 730
Target Start/End: Complemental strand, 21372547 - 21372469
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacat 730  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||| || | ||||||| ||||||||||||||||||||    
T  21372547 aaaacataacactttaacttttaaaaagttgaatacacgactttttatgcgtatatttctataataagttccttaacat 21372469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 682 - 761
Target Start/End: Complemental strand, 26014464 - 26014385
Alignment:
Q  682 aaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcc 761  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||| ||||| ||| ||||||| |||||||    
T  26014464 aaatgcacgacttttgatacatatattttaataatgagtttcttaatatgtgtcattgaagacataagttagtatttgcc 26014385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 460 - 545
Target Start/End: Original strand, 7637591 - 7637675
Alignment:
Q  460 tccttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaaacgttacaaactta 545  Q
    ||||||| |||||| |||||||||||||||||| | |||  ||||||||||||| |||| ||||||||||||| ||||||||||||    
T  7637591 tccttaaggcacaagtttagaagtcaaatgtagaatttttcttttgaaaattgtgcattcaatgtcttgaaaa-gttacaaactta 7637675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 658 - 763
Target Start/End: Original strand, 31592409 - 31592514
Alignment:
Q  658 taatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatt 757  Q
    ||||| ||||||| |||||||||| |||||||||||||| |||| ||| ||||| |||| | |||||||||||||||  |||||  || ||||||| |||    
T  31592409 taatattttaactattaaaaagttgaatgcacgacttttaatacgtatttttttgtaatgaattccttaacatgtgtatttgaaggcataagttagtatt 31592508  T
Q  758 tgcctt 763  Q
    ||||||    
T  31592509 tgcctt 31592514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 39698273 - 39698218
Alignment:
Q  252 taaataggctgtataaatgagtaatataattttggaaggaattggaaaggtaatat 307  Q
    |||||||||| || |||||||||||||||||||||||||||||| |||||||||||    
T  39698273 taaataggctttaaaaatgagtaatataattttggaaggaattgcaaaggtaatat 39698218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 639 - 721
Target Start/End: Complemental strand, 7774713 - 7774631
Alignment:
Q  639 aattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagtt 721  Q
    |||||||||||  ||||||||| | |||||  ||||| ||||| ||||||||||||||||||||||||||| |||||| ||||    
T  7774713 aattttacattggaaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatgagtt 7774631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 639 - 721
Target Start/End: Complemental strand, 7791360 - 7791278
Alignment:
Q  639 aattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagtt 721  Q
    |||||||||||  ||||||||| | |||||  ||||| ||||| ||||||||||||||||||||||||||| |||||| ||||    
T  7791360 aattttacattggaaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatgagtt 7791278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 639 - 721
Target Start/End: Complemental strand, 7811944 - 7811862
Alignment:
Q  639 aattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagtt 721  Q
    |||||||||||  ||||||||| | |||||  ||||| ||||| ||||||||||||||||||||||||||| |||||| ||||    
T  7811944 aattttacattggaaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatgagtt 7811862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 671 - 759
Target Start/End: Original strand, 5493362 - 5493450
Alignment:
Q  671 tttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttg 759  Q
    ||||||||||| ||||||||||||||||| | | ||||| |||||| | || ||||||||||| ||||||   ||||||||||||||||    
T  5493362 tttaaaaagttgaatgcacgacttttgatgcgtgtatttctataatgactttcttaacatgtgcccttgagggcacaagttagcatttg 5493450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 728
Target Start/End: Complemental strand, 41720217 - 41720141
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaac 728  Q
    |||||| |||| ||||| |||||| |||||||||||||||||||| || ||||||||| |||||  |||||||||||    
T  41720217 aaaacacaatagtttaatttttaagaagttaaatgcacgacttttaatccatatatttatataaagagttccttaac 41720141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 672 - 735
Target Start/End: Complemental strand, 45244763 - 45244700
Alignment:
Q  672 ttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtc 735  Q
    |||||||||| |||||||||||||| |||| ||||||| |||||| ||||| ||||||||||||    
T  45244763 ttaaaaagttgaatgcacgacttttaatacgtatatttctataatgagttcattaacatgtgtc 45244700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 664 - 758
Target Start/End: Complemental strand, 14042146 - 14042052
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcattt 758  Q
    ||||| |||||||||||| ||||||| | |||| |||| | ||||||||||| || |||||||| |||||| ||| | | |||||||||||||||    
T  14042146 tttaatttttaaaaagttgaatgcacaatttttaatacgtttatttttataacaacttccttaatatgtgttcttaagatcacaagttagcattt 14042052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 652 - 726
Target Start/End: Complemental strand, 42685813 - 42685739
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttcctta 726  Q
    ||||||||||| |||||||||| | ||||| | | |||||||||||||||| |||||| |||||||| |||||||    
T  42685813 aaaacataatattttaactttttagaagttgactacacgacttttgatacacatatttctataataaattcctta 42685739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 652 - 741
Target Start/End: Complemental strand, 34576792 - 34576703
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaa 741  Q
    |||||||||||  |||| |||||| ||||| ||||||||||||||||| |  ||||||  |||||||||| |||| |||||| |||||||    
T  34576792 aaaacataatatgttaatttttaagaagttgaatgcacgacttttgatccgcatatttccataataagtttcttagcatgtgcccttgaa 34576703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 17920221 - 17920285
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataat 716  Q
    ||||||||||| || ||||||||| ||||| |||| |||||||||||||| |||||| |||||||    
T  17920221 aaaacataatatttcaacttttaagaagttgaatgtacgacttttgatacgtatattcttataat 17920285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 683 - 758
Target Start/End: Original strand, 8769086 - 8769161
Alignment:
Q  683 aatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcattt 758  Q
    ||||||| |||||| |||||||||||| |||||| |||||||||| ||||| ||||||   ||| |||||||||||    
T  8769086 aatgcacaactttttatacatatatttctataatgagttccttaagatgtgcccttgaggccaccagttagcattt 8769161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 637 - 748
Target Start/End: Complemental strand, 13949065 - 13948954
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaa-aagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtc 735  Q
    |||| |||| |||| ||||||| ||| |||||||||| || || || | | ||||||||||| ||| ||||||| ||||||||||| ||||||||||| |    
T  13949065 gcaactttatattaaaaaacatgataatttaactttttaagaaattgactacacgacttttg-tacgtatatttctataataagtttcttaacatgtgcc 13948967  T
Q  736 cttgaaaacacaa 748  Q
     ||||| ||||||    
T  13948966 attgaagacacaa 13948954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 709
Target Start/End: Complemental strand, 22941988 - 22941917
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatattt 709  Q
    ||||||||||||| ||||| |||||| || |||| ||||||||||||||  ||| ||||||||  |||||||    
T  22941988 caattttacattaaaaaacttaatacatttacttgtaaaaagttaaatggccgaattttgataagtatattt 22941917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 903 - 950
Target Start/End: Complemental strand, 35865196 - 35865149
Alignment:
Q  903 cttttgatacgtatatttttataataagttccttaacatttgtccttg 950  Q
    ||||||||| |||||||| |||||||||||||||||||| || |||||    
T  35865196 cttttgatatgtatatttctataataagttccttaacatatgcccttg 35865149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 447 - 532
Target Start/End: Complemental strand, 18181846 - 18181760
Alignment:
Q  447 aatgctaacttgttcc-ttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaaa 532  Q
    ||||||||||||| || |||| ||| |||||||  || ||||||||| || || |||||||||||||| |||| |||||||| ||||    
T  18181846 aatgctaacttgtgcccttaaggcataaatttaatagccaaatgtagaaacttgtttttgaaaattgtgcattcaatgtcttaaaaa 18181760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 652 - 733
Target Start/End: Complemental strand, 15067676 - 15067595
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    ||||||| ||| |||||||||| | || || | ||||||||||||||||| | ||||| |||||  ||||||||||| ||||    
T  15067676 aaaacatcataatttaacttttgagaaattgactgcacgacttttgatacgtttatttctataacgagttccttaacttgtg 15067595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 8e-33; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 650 - 762
Target Start/End: Original strand, 42051167 - 42051279
Alignment:
Q  650 ataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaag 749  Q
    |||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||   ||||||    
T  42051167 ataaaatataatattttaacttttaacaagttgaatgcacgacttttgatacatatatttttataatgagttcattaatatgtgtccttgatggcacaag 42051266  T
Q  750 ttagcatttgcct 762  Q
    |||||||||||||    
T  42051267 ttagcatttgcct 42051279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 637 - 760
Target Start/End: Original strand, 27918378 - 27918501
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||||||| ||||  |||| |||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  27918378 gcaattttgcattgaaaaatataatattttaacttttaagaagtttaatgcacgacttttgatacatatatttctataacgagttccttaacatgtgtcc 27918477  T
Q  737 ttgaaaacacaagttagcatttgc 760  Q
    ||||   |||||||||||||||||    
T  27918478 ttgagggcacaagttagcatttgc 27918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 652 - 760
Target Start/End: Complemental strand, 36989938 - 36989829
Alignment:
Q  652 aaaacataatacttt-aacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagt 750  Q
    ||||||||||| ||| ||||||||| ||||| |||||||||||||| |||  |||||||||||||| |||| ||||| ||||| ||||||  ||||||||    
T  36989938 aaaacataatattttgaacttttaagaagttgaatgcacgacttttaatatgtatatttttataatgagtttcttaatatgtgcccttgaggacacaagt 36989839  T
Q  751 tagcatttgc 760  Q
    || |||||||    
T  36989838 taacatttgc 36989829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 652 - 760
Target Start/End: Original strand, 41459943 - 41460052
Alignment:
Q  652 aaaacataatactt-taacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagt 750  Q
    |||||||||||||| |||||||||| |||| |||| ||||| |||| |||| ||||||| ||||||||||| |||||||| ||| |||||| || |||||    
T  41459943 aaaacataatacttgtaacttttaagaagtcaaatacacgatttttaatacgtatatttctataataagtttcttaacatatgttcttgaagacccaagt 41460042  T
Q  751 tagcatttgc 760  Q
    || |||||||    
T  41460043 taacatttgc 41460052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 637 - 709
Target Start/End: Original strand, 34936394 - 34936466
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatattt 709  Q
    |||| |||| |||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  34936394 gcaactttatattaaaaaacataatattttaacttttaaaaagttaaatgtacgactttcgatacatatattt 34936466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 637 - 762
Target Start/End: Complemental strand, 22019508 - 22019383
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||||||||||||  |||| || ||| ||| | |||| | ||||| |||| |||| |||| || ||||||||| |||||| ||||| |||||||||||||    
T  22019508 gcaattttacattggaaaatatgatagtttcattttttagaagttgaatgtacgatttttaatgcatatatttctataatgagttctttaacatgtgtcc 22019409  T
Q  737 ttgaaaacacaagttagcatttgcct 762  Q
    ||||   |||||||||||||||||||    
T  22019408 ttgagggcacaagttagcatttgcct 22019383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 664 - 763
Target Start/End: Complemental strand, 1961702 - 1961603
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcctt 763  Q
    |||||||||| | ||||| ||||||||||||||||||  ||||||| |||||||||||  |||||||||| ||||||   ||||| ||| ||||||||||    
T  1961702 tttaactttttagaagttgaatgcacgacttttgatatttatatttctataataagttttttaacatgtgcccttgagggcacaaattaacatttgcctt 1961603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 666 - 752
Target Start/End: Original strand, 30033589 - 30033674
Alignment:
Q  666 taacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtta 752  Q
    |||||||||| |||| ||||| |||||||||||||| | ||||| |||||||| |||||||||||||| ||||||  ||||||||||    
T  30033589 taacttttaagaagtcaaatgtacgacttttgatacgtttatttctataataaattccttaacatgtg-ccttgatgacacaagtta 30033674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 760
Target Start/End: Original strand, 564168 - 564276
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||| | ||||| |||||| |||| |||||||| | |||| |||| ||||||| ||||||||  ||||||||||||  ||||||  |||||||||    
T  564168 aaaacataacattttaatttttaagaagtcaaatgcacaatttttaatacgtatatttctataataaactccttaacatgtacccttgaggacacaagtt 564267  T
Q  752 agcatttgc 760  Q
    | |||||||    
T  564268 aacatttgc 564276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 732
Target Start/End: Original strand, 1008953 - 1009033
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgt 732  Q
    ||||||||||| ||||||||||||  |||| |||| | |||||||||||||||||||| || ||||| || ||||||||||    
T  1008953 aaaacataatattttaacttttaagtagttgaatgtatgacttttgatacatatatttctacaataaatttcttaacatgt 1009033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 760
Target Start/End: Complemental strand, 24940734 - 24940627
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||| ||   ||||||| | |||||||||  |||||||||| |||||||   |||||||    
T  24940734 aaaacataatatattaacttttaagaagttgaatgcacgactttttatgtttatatttctttaataagtt-tttaacatgtgcccttgaaggtacaagtt 24940636  T
Q  752 agcatttgc 760  Q
    |||||||||    
T  24940635 agcatttgc 24940627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 637 - 761
Target Start/End: Original strand, 28675727 - 28675851
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||||||| ||||| |||||||||||  |  ||||||||| |||| ||||||  | ||||||||  ||||||| |||||| | |||||||||||||| ||    
T  28675727 gcaattttgcattagaaaacataatatatcgacttttaaacagttgaatgcaaaaattttgatatgtatatttctataatgacttccttaacatgtgccc 28675826  T
Q  737 ttgaaaacacaagttagcatttgcc 761  Q
    || |  ||| |||||||||||||||    
T  28675827 ttaaggacataagttagcatttgcc 28675851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 667 - 763
Target Start/End: Original strand, 50297709 - 50297805
Alignment:
Q  667 aacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcctt 763  Q
    ||||||||| ||||| |||||||| |||||||||  | ||||| |||||| |||  ||||||||||| ||||||   ||||||||||||||||||||    
T  50297709 aacttttaagaagttgaatgcacgccttttgatatgtgtatttctataatgagtatcttaacatgtgcccttgagggcacaagttagcatttgcctt 50297805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 652 - 759
Target Start/End: Original strand, 9791305 - 9791412
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||| |||  ||||||||||||||||| | | ||||| || |||||  ||||||| |||||| | ||| |||||||||||| ||||||| |||||||    
T  9791305 aaaacattatatcttaacttttaaaaagttcactacacgatttctgatatgtatatttctataatgaattcattaacatgtgtctttgaaaatacaagtt 9791404  T
Q  752 agcatttg 759  Q
    | ||||||    
T  9791405 aacatttg 9791412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 672 - 758
Target Start/End: Complemental strand, 26546094 - 26546007
Alignment:
Q  672 ttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaa-acacaagttagcattt 758  Q
    |||| |||||||||||||||||||| |||  |||||||||||||||| ||  ||||||||||||||  ||| |||||||||| |||||    
T  26546094 ttaagaagttaaatgcacgacttttaatatgtatatttttataataacttttttaacatgtgtcctcaaaagacacaagttaacattt 26546007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 637 - 727
Target Start/End: Complemental strand, 38705864 - 38705774
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaa 727  Q
    |||||||| ||||  |||| |||||| |||||||||| ||||||  | | ||||| ||||||| ||||||||| |||||||||||||||||    
T  38705864 gcaattttgcattgaaaaatataatattttaactttttaaaagtcgattacacgatttttgatgcatatatttctataataagttccttaa 38705774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 652 - 757
Target Start/End: Original strand, 45249947 - 45250052
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||||| ||||| |||||| ||||| ||||||||||||||||||   |||||| ||||| || || |||| |||||| ||||||   ||||||||    
T  45249947 aaaacataatattttaaattttaagaagttgaatgcacgacttttgatatgaatatttctataaaaaatttcttagcatgtgcccttgagggcacaagtt 45250046  T
Q  752 agcatt 757  Q
    | ||||    
T  45250047 aacatt 45250052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 664 - 735
Target Start/End: Original strand, 36937484 - 36937555
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtc 735  Q
    |||||||||||| ||||| ||||||||  |||| |||||||||||| |||||| ||||  ||||||||||||    
T  36937484 tttaacttttaagaagttgaatgcacgtttttttatacatatatttctataatgagtttgttaacatgtgtc 36937555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 652 - 758
Target Start/End: Complemental strand, 14139079 - 14138973
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    |||| |||||| |||||||||||| || || | | ||||| ||||||||| ||||||| |||||   |||| |||||||||| |||||||  ||||||||    
T  14139079 aaaatataatattttaacttttaagaaattgactacacgatttttgatacgtatatttctataaagggttcattaacatgtgcccttgaaggcacaagtt 14138980  T
Q  752 agcattt 758  Q
    | |||||    
T  14138979 aacattt 14138973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 652 - 732
Target Start/End: Original strand, 40311735 - 40311815
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgt 732  Q
    ||||||||||| ||||| |||||| || || | | ||||||||||||||| |||||| ||||||| | || ||||||||||    
T  40311735 aaaacataatattttaatttttaagaaattgactacacgacttttgatacgtatattattataatgaatttcttaacatgt 40311815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 652 - 732
Target Start/End: Original strand, 40321811 - 40321891
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgt 732  Q
    ||||||||||| ||||| |||||| || || | | ||||||||||||||| |||||| ||||||| | || ||||||||||    
T  40321811 aaaacataatattttaatttttaagaaattgactacacgacttttgatacgtatattattataatgaatttcttaacatgt 40321891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 637 - 733
Target Start/End: Original strand, 54719664 - 54719760
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    |||||||| ||||  |||| || ||| |||||||||||| ||||| | |  ||||||||| |||  ||||||| |||||||| ||||||||||||||    
T  54719664 gcaattttgcattgaaaaatatgataatttaacttttaagaagttgactatacgacttttaataagtatatttctataataaattccttaacatgtg 54719760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 894 - 972
Target Start/End: Original strand, 27918424 - 27918503
Alignment:
Q  894 aatgcacagcttttgatacgtatatttttataataagttccttaacatttgtccttggagacac-agttagcatttgctt 972  Q
    |||||||  |||||||||| ||||||| |||||  ||||||||||||| ||||||||  | ||| |||||||||||||||    
T  27918424 aatgcacgacttttgatacatatatttctataacgagttccttaacatgtgtccttgagggcacaagttagcatttgctt 27918503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 763
Target Start/End: Complemental strand, 29508694 - 29508635
Alignment:
Q  704 atatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcctt 763  Q
    ||||||||||||| |||||||||||||||| ||||||   || |||||| ||||||||||    
T  29508694 atatttttataattagttccttaacatgtgcccttgagggcataagttaacatttgcctt 29508635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 700
Target Start/End: Complemental strand, 29508783 - 29508720
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgata 700  Q
    |||||||| ||||  ||||||||||| || ||||||||| ||||| ||| ||||||||||||||    
T  29508783 gcaattttgcattggaaaacataatatttaaacttttaagaagttgaatacacgacttttgata 29508720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 733
Target Start/End: Original strand, 53850139 - 53850202
Alignment:
Q  670 ttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    |||| ||||||| |||||||||||||||||||||  |||| | ||||||||| || ||||||||    
T  53850139 ttttgaaaagttgaatgcacgacttttgatacatgcatttctttaataagtttctaaacatgtg 53850202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 461 - 531
Target Start/End: Original strand, 37861179 - 37861249
Alignment:
Q  461 ccttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaa 531  Q
    |||||| |||||| |||||||  ||||||||| || ||| ||||| ||||||| |||| ||||||||||||    
T  37861179 ccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcattcaatgtcttgaaa 37861249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 39260089 - 39260023
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacat 730  Q
    ||||| |||||| ||||| ||||||| |||||| || | ||||||||||||||  ||||||||||||    
T  39260089 tttaatttttaagaagttgaatgcacaactttttatgcgtatatttttataatgggttccttaacat 39260023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 475 - 532
Target Start/End: Original strand, 16692104 - 16692161
Alignment:
Q  475 tttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaaa 532  Q
    |||||||| ||||| ||  |||||||||||||||||||| |||| ||| |||||||||    
T  16692104 tttagaagccaaatataaaaatttatttttgaaaattgtgcattcaatatcttgaaaa 16692161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 970
Target Start/End: Original strand, 42051200 - 42051277
Alignment:
Q  894 aatgcacagcttttgatacgtatatttttataataagttccttaacatttgtccttggagacac-agttagcatttgc 970  Q
    |||||||  |||||||||| |||||||||||||| ||||| |||| || ||||||||  | ||| |||||||||||||    
T  42051200 aatgcacgacttttgatacatatatttttataatgagttcattaatatgtgtccttgatggcacaagttagcatttgc 42051277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 652 - 762
Target Start/End: Complemental strand, 32786894 - 32786784
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||   ||||||||    
T  32786894 aaaacataatattttaacttttaagaagttgaatgcacgacttttgatacgtatatttatataatgagttccttaacatgtgcccttgagggcacaagtt 32786795  T
Q  752 agcatttgcct 762  Q
    |||||||||||    
T  32786794 agcatttgcct 32786784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 638 - 741
Target Start/End: Complemental strand, 31399396 - 31399293
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcct 737  Q
    |||||||| |||| |||| || ||| ||||||||||||||||||||||  || |||||| |||  |||||||||||||| |||| |||||||||| ||||    
T  31399396 caattttatattaaaaaatatgatagtttaacttttaaaaagttaaatatacaacttttaatatgtatatttttataatgagtttcttaacatgtatcct 31399297  T
Q  738 tgaa 741  Q
    ||||    
T  31399296 tgaa 31399293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 638 - 759
Target Start/End: Original strand, 26081016 - 26081137
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcct 737  Q
    ||||||| |||| |||||||||||| |||||||||||| ||||| |  |||| | |||| |||  ||||||| |||||| |||||||||| ||||| | |    
T  26081016 caattttgcattgtaaaacataatattttaacttttaagaagttgacggcacaatttttaatatgtatatttctataatgagttccttaatatgtgccat 26081115  T
Q  738 tgaaaacacaagttagcatttg 759  Q
    |||  |||||||||||||||||    
T  26081116 tgaggacacaagttagcatttg 26081137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 638 - 759
Target Start/End: Original strand, 26104803 - 26104924
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcct 737  Q
    ||||||| |||| |||||||||||| |||||||||||| ||||| |  |||| | |||| |||  ||||||| |||||| |||||||||| ||||| | |    
T  26104803 caattttgcattgtaaaacataatattttaacttttaagaagttgacggcacaatttttaatatgtatatttctataatgagttccttaatatgtgccat 26104902  T
Q  738 tgaaaacacaagttagcatttg 759  Q
    |||  |||||||||||||||||    
T  26104903 tgaggacacaagttagcatttg 26104924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 664 - 769
Target Start/End: Original strand, 34964029 - 34964134
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcctt 763  Q
    |||||||||| | ||||||| |||||||||||||||| |||||||| |||||| | ||| ||||||||   |||| || |||||||||||||||||| ||    
T  34964029 tttaactttttagaagttaactgcacgacttttgataaatatatttctataatgaattctttaacatgcacccttaaagacacaagttagcatttgcatt 34964128  T
Q  764 ctttta 769  Q
     |||||    
T  34964129 gtttta 34964134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 664 - 740
Target Start/End: Complemental strand, 28337296 - 28337220
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttga 740  Q
    |||||||||||| ||||| | ||||||| |||| |||||||||||| |||||| |||| ||||||||||| ||||||    
T  28337296 tttaacttttaagaagttgattgcacgattttttatacatatatttctataatgagtttcttaacatgtgcccttga 28337220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 644 - 759
Target Start/End: Complemental strand, 24331095 - 24330976
Alignment:
Q  644 tacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataat----aagttccttaacatgtgtccttg 739  Q
    ||||||| |||| ||||||  | || |||||| ||| | ||| ||||||||||||||| ||||||||||||||    ||||| ||||| ||||||| |||    
T  24331095 tacattaaaaaatataatatgtcaatttttaagaagcttaatacacgacttttgatacgtatatttttataatgatcaagttacttaatatgtgtctttg 24330996  T
Q  740 aaaacacaagttagcatttg 759  Q
    |  | |||||||||||||||    
T  24330995 aggatacaagttagcatttg 24330976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 656 - 730
Target Start/End: Complemental strand, 25119838 - 25119764
Alignment:
Q  656 cataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacat 730  Q
    ||||||| |||||||||||| |||| |||||||||||||||  ||| | ||||| || |||||||| ||||||||    
T  25119838 cataatattttaacttttaagaagtcaaatgcacgacttttagtacgtgtatttctacaataagtttcttaacat 25119764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 652 - 758
Target Start/End: Original strand, 47390573 - 47390679
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||||| || |||||| || ||||| |||| ||||||||| |||| |||||||  ||||| ||||  ||||||| ||||||||||  || |||||    
T  47390573 aaaacataatatttgaactttcaagaagttgaatgtacgacttttaatacgtatatttaaataatgagttttttaacatatgtccttgaaggcataagtt 47390672  T
Q  752 agcattt 758  Q
     ||||||    
T  47390673 ggcattt 47390679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 664 - 761
Target Start/End: Original strand, 2741460 - 2741557
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcc 761  Q
    ||||| |||||| |||| |||| ||||||| ||||||  ||||||| ||||||||||| ||||||||  | ||||||  | ||||||||| |||||||    
T  2741460 tttaatttttaagaagtcaaatacacgactcttgataagtatatttatataataagtttcttaacatacgaccttgaggatacaagttagtatttgcc 2741557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 703 - 752
Target Start/End: Original strand, 5083085 - 5083134
Alignment:
Q  703 tatatttttataataagttccttaacatgtgtccttgaaaacacaagtta 752  Q
    ||||||| |||||||||||| ||||||||| |||||||| ||||||||||    
T  5083085 tatatttctataataagttcattaacatgtatccttgaagacacaagtta 5083134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 894 - 970
Target Start/End: Complemental strand, 32786863 - 32786786
Alignment:
Q  894 aatgcacagcttttgatacgtatatttttataataagttccttaacatttgtccttggagacac-agttagcatttgc 970  Q
    |||||||  |||||||||||||||||| |||||| ||||||||||||| || |||||  | ||| |||||||||||||    
T  32786863 aatgcacgacttttgatacgtatatttatataatgagttccttaacatgtgcccttgagggcacaagttagcatttgc 32786786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 461 - 545
Target Start/End: Complemental strand, 21212800 - 21212717
Alignment:
Q  461 ccttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaaacgttacaaactta 545  Q
    |||||| |||||| |||| | ||||||||||  || ||||||||||||||| |||||| ||||| ||||||| |||| |||||||    
T  21212800 ccttaaggcacaagtttaaatgtcaaatgtaaaaacttatttttgaaaattatacattcaatgttttgaaaa-gttaaaaactta 21212717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 726
Target Start/End: Original strand, 39837473 - 39837532
Alignment:
Q  667 aacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttcctta 726  Q
    ||||||||| ||||| ||||||||||||||||||| | ||||| |||||| | |||||||    
T  39837473 aacttttaagaagttgaatgcacgacttttgatacgtgtatttctataattaattcctta 39837532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 531
Target Start/End: Complemental strand, 47375920 - 47375857
Alignment:
Q  468 gcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaa 531  Q
    |||||| |||||||  ||||||||| || ||||||||| ||||||| |||| ||||||||||||    
T  47375920 gcacaagtttagaatccaaatgtagaaacttatttttggaaattgtgcattcaatgtcttgaaa 47375857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 667 - 733
Target Start/End: Complemental strand, 2033699 - 2033633
Alignment:
Q  667 aacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    ||||||||||||||| ||||||| | |||| ||| || ||||| ||||||||| | |||||||||||    
T  2033699 aacttttaaaaagttgaatgcacaattttttataaatgtatttctataataaggttcttaacatgtg 2033633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 652 - 741
Target Start/End: Original strand, 27075034 - 27075123
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaa 741  Q
    |||| |||||| |||||||||||||||||| |||  || | |||| |||  ||||||||| |||| ||||  ||||||||||| ||||||    
T  27075034 aaaatataatattttaacttttaaaaagttgaatatacaatttttaatatgtatatttttttaatgagttaattaacatgtgttcttgaa 27075123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 652 - 741
Target Start/End: Complemental strand, 27203279 - 27203190
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaa 741  Q
    |||| |||||| |||||||||||||||||| |||  || | |||| |||  ||||||||| |||| ||||  ||||||||||| ||||||    
T  27203279 aaaatataatattttaacttttaaaaagttgaatatacaatttttaatatgtatatttttttaatgagttaattaacatgtgttcttgaa 27203190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 693 - 758
Target Start/End: Original strand, 37394347 - 37394412
Alignment:
Q  693 ttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcattt 758  Q
    |||||||||||||||||||| ||||| ||  |||| ||||||| |||| | ||||||||| |||||    
T  37394347 ttttgatacatatatttttaaaataaattttttaatatgtgtctttgatagcacaagttaacattt 37394412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 463 - 524
Target Start/End: Complemental strand, 42244532 - 42244471
Alignment:
Q  463 ttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgt 524  Q
    |||| |||||| ||||||| | |||||||| || ||||||||| |||||||||||| |||||    
T  42244532 ttaacgcacaagtttagaatttaaatgtagaaacttatttttggaaattgtacattcaatgt 42244471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 652 - 729
Target Start/End: Original strand, 47991000 - 47991077
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaaca 729  Q
    ||||||| ||| ||||||||||||  |||| | |||||| |||||||||| ||||| | |||||| | ||||||||||    
T  47991000 aaaacatgataatttaacttttaaggagttcactgcacggcttttgatacgtatatatctataatgaattccttaaca 47991077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 3e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 637 - 763
Target Start/End: Complemental strand, 3787547 - 3787421
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||||||||||||| ||||||| ||| |||||||||||| || || |||| | ||||||| |||| |||||||||||||||||||| |||||||||||||    
T  3787547 gcaattttacattagaaaacatgatagtttaacttttaagaaattgaatgtatgacttttaatacgtatatttttataataagttctttaacatgtgtcc 3787448  T
Q  737 ttgaaaacacaagttagcatttgcctt 763  Q
    ||||   ||||| ||||||||||||||    
T  3787447 ttgagggcacaaattagcatttgcctt 3787421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 652 - 764
Target Start/End: Complemental strand, 30249248 - 30249136
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||||| |||||||||||| ||||| | ||||||| ||||||||| ||||||| |||||| |||||||||||||||||| || |   ||||||||    
T  30249248 aaaacataatattttaacttttaagaagttgactgcacgaattttgatacctatatttctataatgagttccttaacatgtgtcattaagggcacaagtt 30249149  T
Q  752 agcatttgccttc 764  Q
    |||||||| ||||    
T  30249148 agcatttgtcttc 30249136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 469 - 545
Target Start/End: Original strand, 357170 - 357245
Alignment:
Q  469 cacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaaacgttacaaactta 545  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| |||| ||||| ||||||| ||||||||||||    
T  357170 cacaaatttagaagccaaatgtagaaatttatttttgaaaattgtgcattcaatgttttgaaaa-gttacaaactta 357245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 639 - 725
Target Start/End: Complemental strand, 1065705 - 1065619
Alignment:
Q  639 aattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttcctt 725  Q
    ||||||| |||  |||| |||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||| || ||||||||    
T  1065705 aattttatattggaaaatataatagtttaacttttaataagttgaatgtacgacttttgatacatatatttttattatgagttcctt 1065619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 687 - 763
Target Start/End: Original strand, 14215159 - 14215235
Alignment:
Q  687 cacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcctt 763  Q
    ||||| |||||||||||||||| ||||||||||||| |||| ||||| |||| || |||||||||| ||||||||||    
T  14215159 cacgatttttgatacatatattcttataataagttcattaagatgtgcccttcaagacacaagttaacatttgcctt 14215235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 658 - 762
Target Start/End: Original strand, 30438430 - 30438534
Alignment:
Q  658 taatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatt 757  Q
    ||||| || ||||||||| ||||| |||| |||||| ||||||| |||||||||||||  |||||| ||||||||| ||||||    |||||||||||||    
T  30438430 taatatttaaacttttaagaagttgaatgtacgactattgatacgtatatttttataaagagttccgtaacatgtgcccttgagggtacaagttagcatt 30438529  T
Q  758 tgcct 762  Q
    |||||    
T  30438530 tgcct 30438534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 664 - 721
Target Start/End: Original strand, 2614370 - 2614427
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagtt 721  Q
    |||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||    
T  2614370 tttaactttttagaagttgaatgcacgacttttgatacgtatatttttataataagtt 2614427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 759
Target Start/End: Complemental strand, 11659344 - 11659252
Alignment:
Q  667 aacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttg 759  Q
    ||||||||| ||||| |||||| || |||| |||||||||||| |||||||  |||||||||||||  ||||||   || |||||||||||||    
T  11659344 aacttttaataagttcaatgcatgattttttatacatatatttctataatatattccttaacatgttcccttgagggcataagttagcatttg 11659252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 903 - 950
Target Start/End: Complemental strand, 3787492 - 3787445
Alignment:
Q  903 cttttgatacgtatatttttataataagttccttaacatttgtccttg 950  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  3787492 cttttaatacgtatatttttataataagttctttaacatgtgtccttg 3787445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 652 - 730
Target Start/End: Original strand, 6469607 - 6469685
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacat 730  Q
    ||||||| ||| ||||| |||||| ||||| | |||||||||||| ||| |||||||| |||||| | |||||||||||    
T  6469607 aaaacatgataatttaatttttaagaagttgactgcacgacttttaataaatatatttctataatgaattccttaacat 6469685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 735
Target Start/End: Complemental strand, 7632759 - 7632691
Alignment:
Q  665 ttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtc 735  Q
    ||||||||||| |||||  ||||||||||||||||  ||| |||| |||||| |||||| |||||||||||    
T  7632759 ttaacttttaacaagttggatgcacgacttttgat--atacatttctataatgagttccataacatgtgtc 7632691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 894 - 932
Target Start/End: Original strand, 2614389 - 2614427
Alignment:
Q  894 aatgcacagcttttgatacgtatatttttataataagtt 932  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  2614389 aatgcacgacttttgatacgtatatttttataataagtt 2614427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 639 - 741
Target Start/End: Original strand, 37316619 - 37316720
Alignment:
Q  639 aattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcctt 738  Q
    |||||||||||| ||||||||| | |||||||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  37316619 aattttacattaaaaaacataaca-tttaacttttaagaagttaaatacacgatttttgatacatatatttttataatgagttccttaacatttgtcctt 37316717  T
Q  739 gaa 741  Q
    |||    
T  37316718 gaa 37316720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 652 - 761
Target Start/End: Original strand, 11017999 - 11018108
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||| ||| |||||||||||| ||||| | |||||||||||| |||| ||||||| ||||||||||||||||||||||| |||||| | ||||||||    
T  11017999 aaaacatgataatttaacttttaagaagttgactgcacgacttttaatacgtatatttctataataagttccttaacatgtgcccttgagagcacaagtt 11018098  T
Q  752 agcatttgcc 761  Q
    | ||||||||    
T  11018099 aacatttgcc 11018108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 652 - 762
Target Start/End: Complemental strand, 16394929 - 16394819
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||| ||| |||||||||||| ||||  | ||  |||||||| |||| |||||||||||||| ||||||||||||||| |||||||| |||||||||    
T  16394929 aaaacatgataatttaacttttaagaagtagactgttcgacttttaatacgtatatttttataatgagttccttaacatgtatccttgaagacacaagtt 16394830  T
Q  752 agcatttgcct 762  Q
    |||||||||||    
T  16394829 agcatttgcct 16394819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 653 - 763
Target Start/End: Complemental strand, 25366838 - 25366728
Alignment:
Q  653 aaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtta 752  Q
    |||||||||| |||||||||||||||||| | | |||||||||||||||  ||| || |||| | ||||||||||||||||||||||| | |||||||||    
T  25366838 aaacataatagtttaacttttaaaaagtttattacacgacttttgatacggataattctatattgagttccttaacatgtgtccttgagagcacaagtta 25366739  T
Q  753 gcatttgcctt 763  Q
     | ||||||||    
T  25366738 acgtttgcctt 25366728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 652 - 759
Target Start/End: Complemental strand, 1035672 - 1035565
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    |||| |||||| |||||||||||| ||||| |||||| |||||||||||  ||||||| |||||| |||||||||||||||| ||||||   ||||||||    
T  1035672 aaaatataatattttaacttttaataagttgaatgcaagacttttgatatgtatatttctataatgagttccttaacatgtgcccttgagggcacaagtt 1035573  T
Q  752 agcatttg 759  Q
    | ||||||    
T  1035572 aacatttg 1035565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 671 - 759
Target Start/End: Original strand, 5799815 - 5799903
Alignment:
Q  671 tttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttg 759  Q
    ||||| ||||| ||||||| ||||||||||  |||||||||||||||| ||||||||||| |||||||||   ||||||||||||||||    
T  5799815 tttaagaagttgaatgcacaacttttgatatgtatatttttataataacttccttaacatatgtccttgagggcacaagttagcatttg 5799903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 637 - 733
Target Start/End: Complemental strand, 16583274 - 16583178
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    |||| |||| |||| ||||||| ||| ||||||| |||| ||||| | | ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  16583274 gcaactttaaattagaaaacatgataatttaactattaagaagttgactacacgacttttgatacgtatgtttttataataagttccttaacatgtg 16583178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 652 - 759
Target Start/End: Complemental strand, 31635545 - 31635438
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| |||  |||||||  ||||| | ||||||||||||| || |||| | ||||| ||    
T  31635545 aaaacataatattttaacttttaagaagttgaatgcacgacttttaatatgtatatttccataatgaattccttaacatgtatctttgagagcacaaatt 31635446  T
Q  752 agcatttg 759  Q
    ||||||||    
T  31635445 agcatttg 31635438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 469 - 531
Target Start/End: Original strand, 34462746 - 34462808
Alignment:
Q  469 cacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaa 531  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  34462746 cacaagtttagaagtcaaatgtagaaatttatttttgaaaattgtgcattcaatgtcttgaaa 34462808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 740
Target Start/End: Original strand, 15281371 - 15281459
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttga 740  Q
    |||| |||||| ||||| |||||||||||||||||||||| |||| || ||||||||| |||||||| ||  ||||||||| |||||||    
T  15281371 aaaatataatattttaatttttaaaaagttaaatgcacgatttttaatgcatatatttctataataaattttttaacatgtatccttga 15281459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 666 - 758
Target Start/End: Original strand, 29033009 - 29033101
Alignment:
Q  666 taacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcattt 758  Q
    |||||||||| ||||| ||||||| ||||||||||| ||||||| |||| | | |||||||||||||||| |||||  ||||| |||||||||    
T  29033009 taacttttaagaagttgaatgcacaacttttgatacgtatatttctatactgatttccttaacatgtgtcattgaaggcacaaattagcattt 29033101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 894 - 950
Target Start/End: Original strand, 5799827 - 5799883
Alignment:
Q  894 aatgcacagcttttgatacgtatatttttataataagttccttaacatttgtccttg 950  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  5799827 aatgcacaacttttgatatgtatatttttataataacttccttaacatatgtccttg 5799883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 903 - 970
Target Start/End: Complemental strand, 16394889 - 16394821
Alignment:
Q  903 cttttgatacgtatatttttataataagttccttaacatttgtccttggagacac-agttagcatttgc 970  Q
    ||||| ||||||||||||||||||| ||||||||||||| | |||||| |||||| |||||||||||||    
T  16394889 cttttaatacgtatatttttataatgagttccttaacatgtatccttgaagacacaagttagcatttgc 16394821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 647 - 759
Target Start/End: Original strand, 28490551 - 28490662
Alignment:
Q  647 attataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacac 746  Q
    |||| ||||||||||| |||||||||| | ||||| | ||||||| ||||||||  ||||||| |||||| | |||||||||||||||| || | | |||    
T  28490551 attaaaaaacataatattttaactttttagaagttgattgcacga-ttttgatatgtatatttctataatgaattccttaacatgtgtcattaagagcac 28490649  T
Q  747 aagttagcatttg 759  Q
    || ||||||||||    
T  28490650 aaattagcatttg 28490662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 638 - 757
Target Start/End: Original strand, 26176352 - 26176471
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcct 737  Q
    ||||||| ||||  ||||||||||| ||| |||||||||||| | |||||||| || || | |||||||||| ||||   ||||| ||||||||| ||||    
T  26176352 caattttgcattgaaaaacataatattttgacttttaaaaagatgaatgcacggctattaagacatatatttctatatcgagttcattaacatgtttcct 26176451  T
Q  738 tgaaaacacaagttagcatt 757  Q
    | || ||||| |||||||||    
T  26176452 taaagacacatgttagcatt 26176471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 461 - 531
Target Start/End: Original strand, 18919274 - 18919344
Alignment:
Q  461 ccttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaa 531  Q
    |||||| |||||| |||| ||| ||||||||| || ||||||||||||||||| |||| ||||||||||||    
T  18919274 ccttaaggcacaagtttataagccaaatgtagaaacttatttttgaaaattgtgcattcaatgtcttgaaa 18919344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 904 - 950
Target Start/End: Original strand, 37316672 - 37316718
Alignment:
Q  904 ttttgatacgtatatttttataataagttccttaacatttgtccttg 950  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||    
T  37316672 ttttgatacatatatttttataatgagttccttaacatttgtccttg 37316718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 637 - 726
Target Start/End: Complemental strand, 4084817 - 4084728
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttcctta 726  Q
    |||| ||||||||  ||||||| ||  |||||||||||||||||| | | |||||||||| |||| ||||||| ||||||||||| ||||    
T  4084817 gcaaatttacattgaaaaacatgattatttaacttttaaaaagttgactacacgacttttaatacgtatatttctataataagttactta 4084728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 760
Target Start/End: Original strand, 36012485 - 36012581
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgc 760  Q
    ||||| |||||| ||||| | || ||||||||  |||| ||||||| |||||||||||| |||||||||| || | ||| ||||||||| |||||||    
T  36012485 tttaatttttaagaagttgattgtacgactttcaatacttatatttctataataagttctttaacatgtgcccgtaaaagcacaagttaacatttgc 36012581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 438 - 531
Target Start/End: Complemental strand, 1640340 - 1640246
Alignment:
Q  438 tttatggataatgctaacttgttccttaaag-cacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaa 531  Q
    |||| ||| |||| |||||||| || ||||| ||||| ||||||||| |||||||| || ||| |||| |||||||| |||| ||||||||||||    
T  1640340 tttaaggaaaatggtaacttgtaccctaaaggcacaagtttagaagttaaatgtagaaacttaattttaaaaattgtgcattcaatgtcttgaaa 1640246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 903 - 941
Target Start/End: Complemental strand, 16583219 - 16583181
Alignment:
Q  903 cttttgatacgtatatttttataataagttccttaacat 941  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  16583219 cttttgatacgtatgtttttataataagttccttaacat 16583181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 659 - 733
Target Start/End: Original strand, 41884683 - 41884757
Alignment:
Q  659 aatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    |||| |||||||||||| |||| ||||||| |||||||||||  ||| ||| |||||| |||| |||||||||||    
T  41884683 aatattttaacttttaagaagtcaaatgcatgacttttgatatgtatgtttctataatgagttacttaacatgtg 41884757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 647 - 732
Target Start/End: Complemental strand, 11420922 - 11420837
Alignment:
Q  647 attataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgt 732  Q
    |||| ||||||||| | ||| ||| |||| ||||| ||| ||| |||||| ||| ||||||||||||||| ||||| |||||||||    
T  11420922 attagaaaacataacatttttactattaagaagttgaatacacaacttttaatatatatatttttataatgagttctttaacatgt 11420837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 903 - 950
Target Start/End: Original strand, 11018039 - 11018086
Alignment:
Q  903 cttttgatacgtatatttttataataagttccttaacatttgtccttg 950  Q
    ||||| |||||||||||| |||||||||||||||||||| || |||||    
T  11018039 cttttaatacgtatatttctataataagttccttaacatgtgcccttg 11018086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 664 - 738
Target Start/End: Original strand, 50014660 - 50014733
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcctt 738  Q
    |||||||||||| ||||| |||||| ||||||| |||||||| |||| |||| |||||  |||| ||||||||||    
T  50014660 tttaacttttaagaagttgaatgcatgacttttaatacatatgttttcataaaaagtt-attaaaatgtgtcctt 50014733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 638 - 762
Target Start/End: Complemental strand, 31262677 - 31262552
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgata-catatatttttataataagttccttaacatgtgtcc 736  Q
    ||||||| ||||  |||||||||||  | ||||||||| ||||| ||||||| | ||||||||   ||||||| |||||| |||| ||||| || || ||    
T  31262677 caattttgcattggaaaacataatatgtcaacttttaagaagttgaatgcacaatttttgatatgttatatttctataatgagtttcttaatatatgccc 31262578  T
Q  737 ttgaaaacacaagttagcatttgcct 762  Q
    ||||    ||||||||||||||||||    
T  31262577 ttgagggtacaagttagcatttgcct 31262552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 652 - 733
Target Start/End: Complemental strand, 42066728 - 42066647
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    ||||||||| | || ||||||||| | ||| |||||||||||||| ||| |||||||| ||| || ||||| |||| |||||    
T  42066728 aaaacataacatttcaacttttaagatgttgaatgcacgacttttaatatatatatttctattatgagttctttaatatgtg 42066647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 5e-28; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 642 - 762
Target Start/End: Complemental strand, 33791593 - 33791473
Alignment:
Q  642 tttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaa 741  Q
    ||||||||  ||||||||||| |||||||||||||||||| |||| ||||| |||||||| |||||||||| ||| | ||||||||||| |||| ||||     
T  33791593 tttacattggaaaacataatattttaacttttaaaaagttgaatgtacgacatttgatacgtatatttttacaatgaattccttaacatatgtcgttgag 33791494  T
Q  742 aacacaagttagcatttgcct 762  Q
     ||||||||||||||||||||    
T  33791493 gacacaagttagcatttgcct 33791473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 652 - 758
Target Start/End: Original strand, 25134144 - 25134250
Alignment:
Q  652 aaaacataatactttaa-cttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagt 750  Q
    ||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| | |||||||    
T  25134144 aaaacataatattttaaactttttagaagttaa-tgcacgacttttgatacatatatttctataatgagttccttaacatgtgtctttgagagcacaagt 25134242  T
Q  751 tagcattt 758  Q
    || |||||    
T  25134243 taacattt 25134250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 652 - 763
Target Start/End: Original strand, 47849981 - 47850092
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    |||| |||||| ||||| |||||||||||  |||||| || |||||||| |||||||| |||||| |||||||||||||||||||||||  |||||| ||    
T  47849981 aaaatataatattttaatttttaaaaagtcgaatgcatgaattttgatagatatatttctataatgagttccttaacatgtgtccttgaggacacaaatt 47850080  T
Q  752 agcatttgcctt 763  Q
    | ||||||||||    
T  47850081 aacatttgcctt 47850092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 652 - 761
Target Start/End: Complemental strand, 47006700 - 47006591
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||| | ||||| |||||| ||||| ||||||||||||||||| |  |||||| ||||| ||||||||||||||||| ||||||   ||||||||    
T  47006700 aaaacataacattttaaattttaagaagttgaatgcacgacttttgatgcgaatatttctataaaaagttccttaacatgtgcccttgagggcacaagtt 47006601  T
Q  752 agcatttgcc 761  Q
    | ||||||||    
T  47006600 aacatttgcc 47006591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 638 - 733
Target Start/End: Complemental strand, 4539974 - 4539879
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    ||||||| ||||  ||||||| ||| |||||||||||| ||||| | ||||||| |||| ||||||||||||||||||| |||| |||||||||||    
T  4539974 caattttgcattgaaaaacatgataatttaacttttaagaagttgattgcacgatttttaatacatatatttttataatgagtttcttaacatgtg 4539879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 652 - 761
Target Start/End: Complemental strand, 39430364 - 39430255
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||||| |||||||||| | ||||| | ||||||||||||||||||||| ||| |||||| ||||| |||| ||| | ||||||   || |||||    
T  39430364 aaaacataatattttaactttttagaagttgactgcacgacttttgatacatatgtttctataatgagttctttaagatgcgcccttgagggcataagtt 39430265  T
Q  752 agcatttgcc 761  Q
    ||||||||||    
T  39430264 agcatttgcc 39430255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 638 - 761
Target Start/End: Original strand, 47499415 - 47499538
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcct 737  Q
    |||||||| |||| |||| ||||||  | ||||||||||||||| ||| ||| |||||| |||| |||||||||||||| | || ||||||||||||| |    
T  47499415 caattttatattagaaaatataatatatgaacttttaaaaagttgaattcacaacttttaatacgtatatttttataatgaatttcttaacatgtgtctt 47499514  T
Q  738 tgaaaacacaagttagcatttgcc 761  Q
    | | | ||||| ||| ||||||||    
T  47499515 taatagcacaaattaacatttgcc 47499538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 652 - 762
Target Start/End: Complemental strand, 18030092 - 18029982
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    |||| |||||| ||| |||||||| || || ||||||||||||||  ||||||||||| | || |||||||||||||||||| ||||||   || |||||    
T  18030092 aaaatataatattttgacttttaagaaattgaatgcacgacttttcgtacatatatttctttattaagttccttaacatgtgcccttgagggcataagtt 18029993  T
Q  752 agcatttgcct 762  Q
    | |||||||||    
T  18029992 aacatttgcct 18029982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 664 - 754
Target Start/End: Original strand, 54787868 - 54787958
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagc 754  Q
    |||||||||||| | ||| |||| |||| ||||||||  |||||||||||||| | ||||||||||| | ||||||||| |||||||||||    
T  54787868 tttaacttttaagatgttgaatgtacgatttttgatatgtatatttttataatgaattccttaacatatatccttgaaagcacaagttagc 54787958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 637 - 759
Target Start/End: Complemental strand, 26040934 - 26040814
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgactttt-gatacatatatttttataataagttccttaacatgtgtc 735  Q
    |||| ||| ||||| ||||||||||| ||||||||   | |||||||||||||||||||| ||||| ||||||| |||||  ||||||||||| ||||||    
T  26040934 gcaactttgcattaaaaaacataatattttaactt---agaagttaaatgcacgactttttgatacgtatatttctataacgagttccttaacgtgtgtc 26040838  T
Q  736 cttgaaaacacaagttagcatttg 759  Q
     |||| | ||||| ||| ||||||    
T  26040837 attgagagcacaaattaacatttg 26040814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 652 - 741
Target Start/End: Original strand, 48192624 - 48192713
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaa 741  Q
    |||||||||||  | ||||||||| ||||| ||||| ||| |||| |||  ||||||| ||||||||||| |||||||||||||||||||    
T  48192624 aaaacataatatgtcaacttttaagaagttgaatgcgcgatttttaataagtatatttctataataagtttcttaacatgtgtccttgaa 48192713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 461 - 545
Target Start/End: Complemental strand, 39956275 - 39956193
Alignment:
Q  461 ccttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaaacgttacaaactta 545  Q
    ||||||||||||| |||||||| |||| |||| |||||||||||||||||||| |||| |||||| |||||| |||| |||||||    
T  39956275 ccttaaagcacaagtttagaagccaaa-gtagaaatttatttttgaaaattgtgcattcaatgtcatgaaaa-gttaaaaactta 39956193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 638 - 761
Target Start/End: Complemental strand, 13638008 - 13637885
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcct 737  Q
    ||||||||| ||  ||||||||| | ||||| |||||| || || ||||||||| ||||||| | |||||||||||||| | || ||||||||||||  |    
T  13638008 caattttacgttggaaaacataacattttaatttttaagaatttgaatgcacgaattttgatgcgtatatttttataatgactttcttaacatgtgtaat 13637909  T
Q  738 tgaaaacacaagttagcatttgcc 761  Q
    |||   || |||||||||||||||    
T  13637908 tgagggcataagttagcatttgcc 13637885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 652 - 759
Target Start/End: Complemental strand, 19961237 - 19961131
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||||| |||||||| || || ||| ||| ||| ||||||||||| ||||||| |||||| ||||||||||||||| ||||| |   ||||||||    
T  19961237 aaaacataatattttaacttctagaa-gttgaatacacaacttttgatacgtatatttctataattagttccttaacatgtatccttcagggcacaagtt 19961139  T
Q  752 agcatttg 759  Q
    | ||||||    
T  19961138 atcatttg 19961131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 647 - 730
Target Start/End: Complemental strand, 42891126 - 42891044
Alignment:
Q  647 attataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacat 730  Q
    |||| ||||||||||| ||||||||||| || |||||| |||||| ||| ||||||||||||| |||||| |||| ||||||||    
T  42891126 attaaaaaacataatattttaacttttagaa-gttaaacgcacgattttcgatacatatatttctataatgagtttcttaacat 42891044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 642 - 732
Target Start/End: Complemental strand, 37919272 - 37919182
Alignment:
Q  642 tttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgt 732  Q
    ||||||||  |||||||||||  | ||||||||| ||||| ||||||| | ||||||||| ||||||| |||||| |||| ||||||||||    
T  37919272 tttacattggaaaacataatatgtcaacttttaagaagttgaatgcacaatttttgatacgtatatttatataatgagtttcttaacatgt 37919182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 665 - 762
Target Start/End: Complemental strand, 17587147 - 17587050
Alignment:
Q  665 ttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcct 762  Q
    ||||||||||| | ||| ||||||||||||||||||| ||| ||| ||| | |||||| |||||||||| ||||||   |||||||||  ||||||||    
T  17587147 ttaacttttaagatgttgaatgcacgacttttgatacgtatttttctattacaagttcattaacatgtgcccttgagggcacaagttaatatttgcct 17587050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 655 - 736
Target Start/End: Complemental strand, 28787771 - 28787690
Alignment:
Q  655 acataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||||| | ||||| ||||||| |||| ||| ||| |||||| |||| |||||||||||||| |||||||||| ||||||||    
T  28787771 acataacattttaatttttaaatagtttaatacacaacttttaatacgtatatttttataatgagttccttaagatgtgtcc 28787690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 690 - 761
Target Start/End: Original strand, 27117956 - 27118027
Alignment:
Q  690 gacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcc 761  Q
    ||||||| ||||||||||||||| ||| ||||||| |||||||| ||||||   |||| |||||||||||||    
T  27117956 gacttttaatacatatatttttacaatgagttcctcaacatgtgcccttgagggcacacgttagcatttgcc 27118027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 642 - 735
Target Start/End: Complemental strand, 36456747 - 36456656
Alignment:
Q  642 tttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtc 735  Q
    ||||||||| |||||||||||  |||| ||||||||||||||||  ||| ||||||  |||||||||| ||| || ||||| |||| |||||||    
T  36456747 tttacattagaaaacataatatcttaatttttaaaaagttaaattgacgtcttttg--acatatatttatattatgagttctttaatatgtgtc 36456656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 494 - 532
Target Start/End: Complemental strand, 39625188 - 39625150
Alignment:
Q  494 aatttatttttgaaaattgtacatttaatgtcttgaaaa 532  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  39625188 aatttatttttgaaaattgtgcatttaatgtcttgaaaa 39625150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 652 - 733
Target Start/End: Complemental strand, 44418556 - 44418475
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    |||| ||||||  ||||||||||| |||||||||||||||||||| || | |||  || | ||||||||||||||| |||||    
T  44418556 aaaatataatatattaacttttaagaagttaaatgcacgactttttatgcgtatgcttctttaataagttccttaatatgtg 44418475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 665 - 734
Target Start/End: Original strand, 53741346 - 53741415
Alignment:
Q  665 ttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgt 734  Q
    ||||||||||| ||||| |||| | |||||||||||| ||||||| |||||| | ||| |||||||||||    
T  53741346 ttaacttttaagaagttgaatgtatgacttttgatacgtatatttctataatgaattctttaacatgtgt 53741415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 664 - 740
Target Start/End: Original strand, 25102050 - 25102125
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttga 740  Q
    |||||||||| | ||||||||| ||| | ||||||||||||||||| |||||| || |||||||||| || ||||||    
T  25102050 tttaacttttgagaagttaaatacacaatttttgatacatatatttctataatgag-tccttaacatatgcccttga 25102125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 652 - 688
Target Start/End: Complemental strand, 33466044 - 33466008
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgca 688  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33466044 aaaacataatattttaacttttaaaaagttaaatgca 33466008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 652 - 740
Target Start/End: Complemental strand, 45628415 - 45628327
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttga 740  Q
    ||||||||| | ||||| || |||||| || ||||||| ||||||||| | |||||||  ||||| ||||| |||||||||||| ||||    
T  45628415 aaaacataacattttaatttctaaaaaattgaatgcacaacttttgattcgtatatttcaataatgagttcattaacatgtgtcattga 45628327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 898 - 941
Target Start/End: Complemental strand, 19961203 - 19961160
Alignment:
Q  898 cacagcttttgatacgtatatttttataataagttccttaacat 941  Q
    |||| |||||||||||||||||| |||||| |||||||||||||    
T  19961203 cacaacttttgatacgtatatttctataattagttccttaacat 19961160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 701
Target Start/End: Complemental strand, 53458836 - 53458805
Alignment:
Q  670 ttttaaaaagttaaatgcacgacttttgatac 701  Q
    ||||||||||||||||||||||||||||||||    
T  53458836 ttttaaaaagttaaatgcacgacttttgatac 53458805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 905 - 970
Target Start/End: Complemental strand, 33791541 - 33791475
Alignment:
Q  905 tttgatacgtatatttttataataagttccttaacatttgtccttggagacac-agttagcatttgc 970  Q
    ||||||||||||||||||| ||| | ||||||||||| |||| |||  ||||| |||||||||||||    
T  33791541 tttgatacgtatatttttacaatgaattccttaacatatgtcgttgaggacacaagttagcatttgc 33791475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 898 - 947
Target Start/End: Complemental strand, 28787739 - 28787690
Alignment:
Q  898 cacagcttttgatacgtatatttttataataagttccttaacatttgtcc 947  Q
    |||| ||||| ||||||||||||||||||| |||||||||| || |||||    
T  28787739 cacaacttttaatacgtatatttttataatgagttccttaagatgtgtcc 28787690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 664 - 721
Target Start/End: Original strand, 51325541 - 51325598
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagtt 721  Q
    ||||| |||||| ||||| ||| |||||||||||||  ||||||||||||||| ||||    
T  51325541 tttaatttttaagaagtttaatacacgacttttgatgaatatatttttataatgagtt 51325598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 665 - 761
Target Start/End: Original strand, 25626319 - 25626415
Alignment:
Q  665 ttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcc 761  Q
    ||||||||||| ||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||||  ||||   ||||||||||||||||||    
T  25626319 ttaacttttaagaagttgaatgtacgacttttgatacgtatatttctataataagttccttaacatgtgttattgagggcacaagttagcatttgcc 25626415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 667 - 763
Target Start/End: Complemental strand, 37230650 - 37230554
Alignment:
Q  667 aacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcctt 763  Q
    ||||||||| || || |||||| |||||||||||||||||||| |||||| | |||||| |||||||||||||||  ||||||||||||||||||||    
T  37230650 aacttttaagaaattgaatgcatgacttttgatacatatatttatataatgatttcctttacatgtgtccttgaaggcacaagttagcatttgcctt 37230554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 637 - 740
Target Start/End: Original strand, 32294552 - 32294655
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||| ||||||||  ||||||||||| ||| |||||| | ||||| |||||||||||||| |||||||||||| |||||| |||||||||||||||| ||    
T  32294552 gcaaatttacattggaaaacataatagtttgacttttcagaagttgaatgcacgacttttaatacatatatttctataatgagttccttaacatgtgccc 32294651  T
Q  737 ttga 740  Q
    ||||    
T  32294652 ttga 32294655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 652 - 759
Target Start/End: Original strand, 44068839 - 44068946
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||| ||| |||||||||||| ||||| | ||||||||||||||||||||||||| |||||| | |||||||||||||||| |||| | ||||| ||    
T  44068839 aaaacatgataatttaacttttaagaagttgattgcacgacttttgatacatatatttctataatgaattccttaacatgtgtctttgagagcacaaatt 44068938  T
Q  752 agcatttg 759  Q
    | ||||||    
T  44068939 aacatttg 44068946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 652 - 769
Target Start/End: Complemental strand, 25626577 - 25626460
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||| ||| |||||||||||| ||||| | | ||||||||||||||| |||||||  ||||||||||| ||||||||||  |||||   ||||||||    
T  25626577 aaaacatgataatttaacttttaagaagttgactacacgacttttgatacgtatatttcaataataagttctttaacatgtgctcttgagggcacaagtt 25626478  T
Q  752 agcatttgccttctttta 769  Q
    |||||||||||| |||||    
T  25626477 agcatttgccttttttta 25626460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 637 - 761
Target Start/End: Complemental strand, 14275874 - 14275751
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||||||| ||||  |||||||||||  ||||||||||| ||||| |||||| |||||||||||| ||||||| |||||| |||||||||| ||||| ||    
T  14275874 gcaattttgcattggaaaacataatatattaacttttaagaagttgaatgcatgacttttgatacgtatatttctataatgagttccttaatatgtgccc 14275775  T
Q  737 ttgaaaacacaagttagcatttgcc 761  Q
    |||    ||||||||||||||||||    
T  14275774 ttg-gggcacaagttagcatttgcc 14275751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 652 - 738
Target Start/End: Complemental strand, 2290364 - 2290278
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcctt 738  Q
    ||||||||||| |||||||  ||| ||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||| ||||    
T  2290364 aaaacataatattttaactagtaagaagttaaatgcacgaatttcgatacatatatttttataatgagtgccttaacatgtgacctt 2290278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 652 - 761
Target Start/End: Original strand, 20061112 - 20061221
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    |||||||||||  | ||||||||| ||||| ||||||| ||||||||||| ||||||| |||||| ||||||||| |||||| ||||||   ||||||||    
T  20061112 aaaacataatatgtcaacttttaagaagttgaatgcacaacttttgatacgtatatttctataatgagttccttagcatgtgcccttgagggcacaagtt 20061211  T
Q  752 agcatttgcc 761  Q
    | ||||||||    
T  20061212 aacatttgcc 20061221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 652 - 761
Target Start/End: Original strand, 39420250 - 39420359
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||||| ||||||||| || ||||| |||||||||| ||| |||  ||||||| |||||| |||||||||||||||| ||||||    |||||||    
T  39420250 aaaacataatattttaactttcaagaagttgaatgcacgacatttaatatgtatatttctataatgagttccttaacatgtgcccttgagcgaacaagtt 39420349  T
Q  752 agcatttgcc 761  Q
    ||||||||||    
T  39420350 agcatttgcc 39420359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 660 - 761
Target Start/End: Complemental strand, 2641542 - 2641441
Alignment:
Q  660 atactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttg 759  Q
    ||||||||| |||||||| ||| | |||||||||||| |||| |||||||||||||| | ||| |||||||||||||||||   |||||||| | |||||    
T  2641542 atactttaatttttaaaatgttgactgcacgacttttcatacgtatatttttataatgatttctttaacatgtgtccttgagggcacaagttggtatttg 2641443  T
Q  760 cc 761  Q
    ||    
T  2641442 cc 2641441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 637 - 733
Target Start/End: Complemental strand, 30549178 - 30549082
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    |||| ||| ||||| ||||||| ||| |||||| ||||| ||||| | ||||||||||||||||| ||||||| |||||  ||||||||||||||||    
T  30549178 gcaaatttgcattaaaaaacatgataatttaacgtttaagaagttgattgcacgacttttgatacgtatatttctataaagagttccttaacatgtg 30549082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 775
Target Start/End: Complemental strand, 39364526 - 39364402
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||||| |||||||||| | ||||| | |  |||||||||||||   |||||| ||||||||||||||||||||||||| ||||  | |||||||    
T  39364526 aaaacataatattttaactttttagaagtttactatacgacttttgatatgcatatttctataataagttccttaacatgtgtcattgaggatacaagtt 39364427  T
Q  752 agcatttgccttct-tttattgtta 775  Q
    || |||| |||| | ||||||||||    
T  39364426 agtatttaccttatctttattgtta 39364402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 637 - 752
Target Start/End: Original strand, 29877057 - 29877172
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||||||| ||||  |||| || ||| |||||||||| | || || | |||||||||||| |||||| |||||||||||| ||||| ||||||||||||     
T  29877057 gcaattttgcattgaaaaatattataatttaacttttgagaaattgactgcacgacttttaatacatttatttttataatgagttctttaacatgtgtct 29877156  T
Q  737 ttgaaaacacaagtta 752  Q
    |||||  |||||||||    
T  29877157 ttgaaggcacaagtta 29877172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 652 - 758
Target Start/End: Complemental strand, 2319256 - 2319151
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    ||||||||||| |||||||  ||| ||||||||||||||| |||  ||||||| ||||||||||| | |  ||||||||||||||||||   ||||||||    
T  2319256 aaaacataatattttaactactaagaagttaaatgcacgaatttcaatacata-atttttataatgaatgtcttaacatgtgtccttgatgccacaagtt 2319158  T
Q  752 agcattt 758  Q
    |||||||    
T  2319157 agcattt 2319151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 652 - 738
Target Start/End: Complemental strand, 9950373 - 9950287
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcctt 738  Q
    ||||||||||| |||||||||| ||||||| | ||||||||||||  ||| ||||||| |||||||| |||||||| ||||| ||||    
T  9950373 aaaacataatattttaactttttaaaagttgactgcacgacttttagtacgtatatttctataataaattccttaatatgtgccctt 9950287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 637 - 763
Target Start/End: Complemental strand, 36285084 - 36284959
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||||||| ||||  |||| |||||| |||||||||||| ||||| |||| || |||||| |||  ||||||||||||||| |||||||||| ||| |||    
T  36285084 gcaattttgcattgaaaaaaataatattttaacttttaagaagttgaatgtacaacttttaatatgtatatttttataatatgttccttaacttgtatcc 36284985  T
Q  737 ttgaaaacacaagttagcatttgcctt 763  Q
     | ||   |||||||||||||||||||    
T  36284984 -tcaagggacaagttagcatttgcctt 36284959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 652 - 758
Target Start/End: Complemental strand, 43451820 - 43451714
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    |||| |||||| |||||||||||| ||||| | | ||||| |||| |||||| ||||| |||||||||||| |||| |  |||| |||||| ||||||||    
T  43451820 aaaatataatattttaacttttaagaagttgattacacgatttttaatacatgtatttatataataagttctttaatacatgtctttgaaagcacaagtt 43451721  T
Q  752 agcattt 758  Q
    |||||||    
T  43451720 agcattt 43451714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 652 - 717
Target Start/End: Complemental strand, 13349767 - 13349702
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataata 717  Q
    |||| |||||| ||||||||||||||| || |||| |||||||||||||| |||||||||||||||    
T  13349767 aaaatataatattttaacttttaaaaaattgaatgtacgacttttgatacttatatttttataata 13349702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 668 - 759
Target Start/End: Complemental strand, 2889194 - 2889103
Alignment:
Q  668 acttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttg 759  Q
    |||||||| ||||| |||| |||| ||||||||  | |||||||||||||||||| |||||||||| ||||||   ||||||||| ||||||    
T  2889194 acttttaagaagttgaatgtacgaattttgatatgtgtatttttataataagttcattaacatgtgcccttgagggcacaagttaacatttg 2889103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 638 - 759
Target Start/End: Original strand, 13487746 - 13487866
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgac-ttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    ||||||||||||  ||||||||||| |||||||||||| ||||||||||||| || |||||||||   || || |||||| ||||| |||||||||| ||    
T  13487746 caattttacattgaaaaacataatattttaacttttaagaagttaaatgcacaactttttgatac--gtacttctataattagttctttaacatgtgccc 13487843  T
Q  737 ttgaaaacacaagttagcatttg 759  Q
    || |  ||| || ||||||||||    
T  13487844 ttaaggacaaaaattagcatttg 13487866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 41890043 - 41890118
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaa 727  Q
    ||||||||| | ||||| |||||| ||||| ||||||||||||||||| | ||||||| ||||||||||| |||||    
T  41890043 aaaacataacattttaatttttaagaagttgaatgcacgacttttgatgcgtatatttctataataagtttcttaa 41890118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 7743794 - 7743860
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacat 730  Q
    |||||||||||| ||||||| ||||||||||| ||| ||||||||| |||||| ||||| |||||||    
T  7743794 tttaacttttaagaagttaactgcacgactttcgatgcatatatttctataatgagttctttaacat 7743860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 664 - 733
Target Start/End: Complemental strand, 7061616 - 7061547
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    |||||||||| | ||||| | | ||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  7061616 tttaactttttagaagtttattacacgacttttgatgcatatatttctataataagttctttaacatgtg 7061547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 638 - 724
Target Start/End: Complemental strand, 15135458 - 15135370
Alignment:
Q  638 caattttacattataaa--acataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttcct 724  Q
    ||||||||||||| |||  | |||||| |||||| ||||| |||||||||||| ||| |||||||| ||||||| |||||||| |||||    
T  15135458 caattttacattaaaaattatataatattttaacctttaataagttaaatgcatgacctttgatacgtatatttctataataaattcct 15135370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 760
Target Start/End: Complemental strand, 15079947 - 15079822
Alignment:
Q  637 gcaattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttcc---ttaacatgtg 733  Q
    |||||||||||||  |||| || ||| |||||||||||| ||||| ||||||||||||||| ||  ||||||| ||  || ||||||   ||||||||||    
T  15079947 gcaattttacattgaaaaatatgatagtttaacttttaagaagttgaatgcacgacttttgctatgtatatttctactatgagttcctaattaacatgtg 15079848  T
Q  734 tccttgaaaacacaagttagcatttgc 760  Q
     ||||  | ||||||||||||||||||    
T  15079847 -cctttgagacacaagttagcatttgc 15079822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 671 - 719
Target Start/End: Complemental strand, 34141688 - 34141640
Alignment:
Q  671 tttaaaaagttaaatgcacgacttttgatacatatatttttataataag 719  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  34141688 tttaaaaagttgaatgcacgacttttaatacgtatatttttataataag 34141640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 903 - 941
Target Start/End: Original strand, 25626346 - 25626384
Alignment:
Q  903 cttttgatacgtatatttttataataagttccttaacat 941  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25626346 cttttgatacgtatatttctataataagttccttaacat 25626384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 894 - 950
Target Start/End: Original strand, 20061143 - 20061199
Alignment:
Q  894 aatgcacagcttttgatacgtatatttttataataagttccttaacatttgtccttg 950  Q
    |||||||| |||||||||||||||||| |||||| ||||||||| ||| || |||||    
T  20061143 aatgcacaacttttgatacgtatatttctataatgagttccttagcatgtgcccttg 20061199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 666 - 714
Target Start/End: Complemental strand, 33278835 - 33278787
Alignment:
Q  666 taacttttaaaaagttaaatgcacgacttttgatacatatatttttata 714  Q
    ||||||||||||||||||||||||||||||| | || || |||||||||    
T  33278835 taacttttaaaaagttaaatgcacgacttttaagacttacatttttata 33278787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 762
Target Start/End: Complemental strand, 409991 - 409892
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc-ttgaaaacacaagttagcatttgcct 762  Q
    |||||||||| | ||||| | ||||||||||||||||  | ||||| |||||  ||||||||||||| || || |||||  ||||||||| |||||||||    
T  409991 tttaacttttgagaagttgactgcacgacttttgataagtttatttctataacgagttccttaacatatgccctttgaaggcacaagttaacatttgcct 409892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 733
Target Start/End: Complemental strand, 44107545 - 44107510
Alignment:
Q  698 atacatatatttttataataagttccttaacatgtg 733  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44107545 atacatatatttttataataacttccttaacatgtg 44107510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 642 - 700
Target Start/End: Original strand, 30944247 - 30944305
Alignment:
Q  642 tttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgata 700  Q
    |||| |||| ||||||||||| || ||||||||||||||| |||| |||| ||||||||    
T  30944247 tttatattagaaaacataatatttcaacttttaaaaagttgaatgtacgatttttgata 30944305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 664 - 759
Target Start/End: Original strand, 41144650 - 41144745
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttg 759  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||| |||||| |||||||||||||||| ||||||  ||||||| || ||||||    
T  41144650 tttaacttttaaaaagttgaatgcacgacttttgatatgtatatttctataatgagttccttaacatgtgcccttgaggacacaagataacatttg 41144745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 638 - 716
Target Start/End: Original strand, 16627302 - 16627380
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataat 716  Q
    ||||||| ||||| |||||||| || |||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  16627302 caattttgcattagaaaacatagtattttaacttttaaaaagttgaatgcacgacttttaatacatatatttttataat 16627380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 653 - 733
Target Start/End: Complemental strand, 10523758 - 10523678
Alignment:
Q  653 aaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    |||||||||| |||||||||||| || || ||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  10523758 aaacataatagtttaacttttaagaaattgaatgcacgacttttgatacgtatatttctataatgagttccttaacatgtg 10523678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 652 - 760
Target Start/End: Complemental strand, 26105113 - 26105005
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagtt 751  Q
    |||||||||||  | ||||||||| || || |||||||||||||| || | ||||||| | ||||||||||||||||||||||| ||||   ||||||||    
T  26105113 aaaacataatatatcaacttttaagaatttgaatgcacgactttttatgcgtatatttctttaataagttccttaacatgtgtcattgagtgcacaagtt 26105014  T
Q  752 agcatttgc 760  Q
    |||||||||    
T  26105013 agcatttgc 26105005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 638 - 733
Target Start/End: Original strand, 554331 - 554426
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtg 733  Q
    ||||||| ||||  |||| || ||| |||||||||||||||||| | |||||| ||||| |||||||||||| |||||| ||||||||||||||||    
T  554331 caattttgcattggaaaatatgataatttaacttttaaaaagttgactgcacggcttttaatacatatatttctataatgagttccttaacatgtg 554426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 652 - 731
Target Start/End: Complemental strand, 29557576 - 29557497
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatg 731  Q
    ||||||| ||| ||||||||||||||| |||| | ||||||||||||||||||||||| |||||||| ||| ||||||||    
T  29557576 aaaacatgataatttaacttttaaaaatttaactacacgacttttgatacatatatttctataataaattctttaacatg 29557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 680 - 738
Target Start/End: Complemental strand, 40845866 - 40845808
Alignment:
Q  680 ttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcctt 738  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  40845866 ttaaatgcacgatttttgatacatatatttttataatgagttccttaacatatgtcctt 40845808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 461 - 531
Target Start/End: Original strand, 523644 - 523714
Alignment:
Q  461 ccttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaa 531  Q
    |||||| |||||| |||||||| ||||| ||  |||||||||||||||||||| |||||||||||||||||    
T  523644 ccttaaggcacaagtttagaagccaaatataaaaatttatttttgaaaattgtgcatttaatgtcttgaaa 523714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 647 - 740
Target Start/End: Complemental strand, 967673 - 967579
Alignment:
Q  647 attataaaacataatactttaacttttaaaaa-gttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttga 740  Q
    |||| ||| ||||||| ||||||||||||||| |||  |||||| |||||| |||||||||||| |||||| | |||||||||||||| ||||||    
T  967673 attaaaaatcataatattttaacttttaaaaaagttggatgcaccacttttaatacatatatttctataatgaattccttaacatgtgcccttga 967579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 740
Target Start/End: Complemental strand, 43340383 - 43340295
Alignment:
Q  652 aaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttga 740  Q
    |||||||||||  ||||||||||| ||||| |||| || |||||| || | ||||||| | ||||||||||||||||||||||| ||||    
T  43340383 aaaacataatatattaacttttaagaagttgaatgtacaactttttatgcttatatttctttaataagttccttaacatgtgtctttga 43340295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 664 - 763
Target Start/End: Complemental strand, 14547915 - 14547816
Alignment:
Q  664 tttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcctt 763  Q
    |||||||||||| || |||| ||||||||||||||| | ||||||| |||||  | |||||||||||||| ||||||   || |||||| ||||||||||    
T  14547915 tttaacttttaataaattaactgcacgacttttgatgcgtatatttctataaggaattccttaacatgtgcccttgagggcataagttaacatttgcctt 14547816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 667 - 768
Target Start/End: Original strand, 24519472 - 24519574
Alignment:
Q  667 aacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaac-atgtgtccttgaaaacacaagttagcatttgccttct 765  Q
    ||||||||| ||||| |||||||||||| ||||||| |||||  |||||||| ||  ||||| ||||| |||||| | |||||||||||||||| ||| |    
T  24519472 aacttttaagaagttgaatgcacgacttgtgatacaaatattcctataataaattttttaacaatgtgcccttgagagcacaagttagcatttgtctttt 24519571  T
Q  766 ttt 768  Q
    |||    
T  24519572 ttt 24519574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 670 - 763
Target Start/End: Original strand, 2987480 - 2987572
Alignment:
Q  670 ttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcctt 763  Q
    |||||| ||||| ||||||||  ||||||||||||||||| |||| | ||||  ||||||||||  ||| |  |||||||||||||||||||||    
T  2987480 ttttaagaagttgaatgcacggattttgatacatatatttatatagtgagtt-tttaacatgtgctcttaaggacacaagttagcatttgcctt 2987572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 904 - 949
Target Start/End: Complemental strand, 40845853 - 40845808
Alignment:
Q  904 ttttgatacgtatatttttataataagttccttaacatttgtcctt 949  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||    
T  40845853 ttttgatacatatatttttataatgagttccttaacatatgtcctt 40845808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 532
Target Start/End: Complemental strand, 6825514 - 6825443
Alignment:
Q  461 ccttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaaa 532  Q
    |||||| |||||| |||| ||| |||| |||  || ||||||||||||||||| |||| |||||||||||||    
T  6825514 ccttaaggcacaagtttaaaagccaaacgtaaaaacttatttttgaaaattgtgcattcaatgtcttgaaaa 6825443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 894 - 941
Target Start/End: Complemental strand, 10523728 - 10523681
Alignment:
Q  894 aatgcacagcttttgatacgtatatttttataataagttccttaacat 941  Q
    |||||||  |||||||||||||||||| |||||| |||||||||||||    
T  10523728 aatgcacgacttttgatacgtatatttctataatgagttccttaacat 10523681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 741
Target Start/End: Complemental strand, 41063935 - 41063864
Alignment:
Q  670 ttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaa 741  Q
    |||| ||||||| |||||||||||||| || | ||||||| | |||||||||| ||||||| | ||||||||    
T  41063935 tttttaaaagtttaatgcacgactttttatgcgtatatttctttaataagttcattaacatatatccttgaa 41063864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 478 - 531
Target Start/End: Original strand, 30246 - 30299
Alignment:
Q  478 agaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaa 531  Q
    ||||| ||||||||| |||| | ||||||||||||| |||| ||||||||||||    
T  30246 agaagccaaatgtagaaattgaattttgaaaattgtccattcaatgtcttgaaa 30299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 639 - 736
Target Start/End: Original strand, 3006 - 3103
Alignment:
Q  639 aattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||||| ||||  ||||||||| | |||||||||||| ||||| |||||| |||||||||||||||||| | |||||| |||||||||||||||||||    
T  3006 aattttgcatttgaaaacataacattttaacttttaagaagttgaatgcatgacttttgatacatatatatctataatgagttccttaacatgtgtcc 3103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 639 - 761
Target Start/End: Original strand, 6047 - 6173
Alignment:
Q  639 aattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc-- 736  Q
    |||||| ||||  ||||||||| | ||||| |||||| ||||| ||| || |||||||||||||||||| | |||||| |||||||||||||||||||      
T  6047 aattttgcatttgaaaacataacattttaatttttaagaagttgaatccatgacttttgatacatatatatctataatgagttccttaacatgtgtccgc 6146  T
Q  737 --ttgaaaacacaagttagcatttgcc 761  Q
      | ||| |||||||||||||||||||    
T  6147 cttcgaagacacaagttagcatttgcc 6173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 638 - 736
Target Start/End: Original strand, 10788 - 10886
Alignment:
Q  638 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtcc 736  Q
    |||||||| |||| |||| || |||  |||| |||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| | ||||||    
T  10788 caattttatattaaaaaatatgatatgttaatttttaaaaagttaaatacacgacttttgatacatatatttctataataaatttcttaaaaagtgtcc 10886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 639 - 721
Target Start/End: Original strand, 553 - 635
Alignment:
Q  639 aattttacattataaaacataatactttaacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagtt 721  Q
    |||||||||||  ||||||||| | |||||  ||||| ||||| ||||||||||||||||||||||||||| |||||| ||||    
T  553 aattttacattggaaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatgagtt 635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 670 - 740
Target Start/End: Complemental strand, 12493 - 12423
Alignment:
Q  670 ttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttga 740  Q
    |||||| ||||| ||||||| ||||||||||| |||||||||||||| ||||| ||||||||| |||||||    
T  12493 ttttaagaagttgaatgcacaacttttgatacgtatatttttataattagttctttaacatgtctccttga 12423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 894 - 950
Target Start/End: Complemental strand, 12480 - 12424
Alignment:
Q  894 aatgcacagcttttgatacgtatatttttataataagttccttaacatttgtccttg 950  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||| | ||||||    
T  12480 aatgcacaacttttgatacgtatatttttataattagttctttaacatgtctccttg 12424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 670 - 761
Target Start/End: Complemental strand, 4601 - 4510
Alignment:
Q  670 ttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcc 761  Q
    |||||| ||||| ||||||||  ||||||||  ||||||| |||||| |||  ||||||||||||||||||   ||||||||||||||||||    
T  4601 ttttaagaagttgaatgcacgcattttgatatgtatatttctataatgagtatcttaacatgtgtccttgagggcacaagttagcatttgcc 4510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 447 - 531
Target Start/End: Complemental strand, 33333 - 33248
Alignment:
Q  447 aatgctaacttgt-tccttaaagcacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaa 531  Q
    ||||||||||| | ||||||||| | || ||||||||| ||||||| ||| | ||||||||||||||| |||| ||||| ||||||    
T  33333 aatgctaacttctgtccttaaagtataagtttagaagttaaatgtaataactaatttttgaaaattgtgcattcaatgttttgaaa 33248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 666 - 763
Target Start/End: Original strand, 321967 - 322054
Alignment:
Q  666 taacttttaaaaagttaaatgcacgacttttgatacatatatttttataataagttccttaacatgtgtccttgaaaacacaagttagcatttgcctt 763  Q
    |||||||||| |||||||||||||||||||| |||          || ||| |||||||||||||||||  |||||  ||||||||||||||||||||    
T  321967 taacttttaagaagttaaatgcacgactttttata----------tacaatgagttccttaacatgtgtttttgaaggcacaagttagcatttgcctt 322054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University