View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4584-Insertion-2 (Length: 499)
Name: NF4584-Insertion-2
Description: NF4584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4584-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 241 - 489
Target Start/End: Complemental strand, 23937253 - 23937005
Alignment:
| Q |
241 |
aatccaatgaaagtatgcattaatgaaaatgcaggttaaagcagaaagtgtgattcttaatggagatccaagggaaatgatttgtcaggctatagagaaa |
340 |
Q |
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| T |
23937253 |
aatccaatgaaagtatgcattaatgaaaatgcaggttaaagcagaaagtgtgattcttaatggagatgcaagagaaatgatttgtgaggctacagagaaa |
23937154 |
T |
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| Q |
341 |
atgcaagttgatctcttaatcatgggtagtcgtggccttggcaaacttaaaaggtaagtgttttctatgaattagtatttataagaaattaaagtaataa |
440 |
Q |
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| T |
23937153 |
atgcaagttgatctcttaatcatgggtagtcgtggccttggcaaactcaaaaggtaagtgttttctatgaattagtatttataagaaattaaagtaataa |
23937054 |
T |
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| Q |
441 |
gcttgctaataattttggtttcatttatgcatggttaatggttctaata |
489 |
Q |
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| T |
23937053 |
gcttgctaataattttggtttcaattatgcatggttgattgttctaata |
23937005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 23937470 - 23937341
Alignment:
| Q |
8 |
gatactttgtcctttcaacagctttttatccatcaacacctgaagttggggattctttgaagaaagcccagcaagaaaaatctgcagctattgcctcacg |
107 |
Q |
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| T |
23937470 |
gatactttgtcctttcaacagctttttatccatcaatacctgaagttggggattctttgaagaaagcccagcaagaaaaatctgcagctattgcctcaca |
23937371 |
T |
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| Q |
108 |
ggctttgcaaatgtgcaaggataagcaggt |
137 |
Q |
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| T |
23937370 |
ggctttgcaaatgtgcaaggataagcaggt |
23937341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 273 - 404
Target Start/End: Complemental strand, 23929875 - 23929744
Alignment:
| Q |
273 |
aggttaaagcagaaagtgtgattcttaatggagatccaagggaaatgatttgtcaggctatagagaaaatgcaagttgatctcttaatcatgggtagtcg |
372 |
Q |
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| T |
23929875 |
aggtcaaagcagaaagtgtaattctcaatggagacccaagggaaatgatttgtcaggcttcagaacaaatgcaagttgatctcttaatcatgggtagccg |
23929776 |
T |
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| Q |
373 |
tggccttggcaaacttaaaaggtaagtgtttt |
404 |
Q |
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| T |
23929775 |
tggcctgggcacactcaaaaggttagtgtttt |
23929744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 23931648 - 23931535
Alignment:
| Q |
21 |
ttcaacagctttttatccatcaacacctgaagttggggattctttgaagaaagcccagcaagaaaaatctgcagctattgcctcacgggctttgcaaatg |
120 |
Q |
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| T |
23931648 |
ttcaacagctttttatccagcatc---tgtggttgtggattcagtgaagaaaggccagcaagaaagatcagcagttattctttcccgggctttgcaaatg |
23931552 |
T |
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| Q |
121 |
tgcaaggataagcaggt |
137 |
Q |
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| T |
23931551 |
tgcaaggataagcaggt |
23931535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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