View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4584-Insertion-4 (Length: 316)
Name: NF4584-Insertion-4
Description: NF4584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4584-Insertion-4 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 170 - 316
Target Start/End: Complemental strand, 25933779 - 25933633
Alignment:
| Q |
170 |
gtgggttgtattggctcgccataatatactcagccttaagatacaaccgcatcagtctttcttcaccttattcgaactgaaacatgtcttctacatcaat |
269 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
25933779 |
gtgggttgtgttggctcgccataatatactcagccttaagatacaaccgcatcagtctttcttcacattattcgaactaaaacatgtcttctacatcaat |
25933680 |
T |
|
| Q |
270 |
gtcattatcaagaagcttaaaatctaacacatgtggcctttgtcgtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25933679 |
gtcattatcaagaagcttaaaatctaacacatgtggcctttgtcgtt |
25933633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 25933941 - 25933843
Alignment:
| Q |
8 |
gatgaaacccaacttgttctaagtatgatgttataaattcactcaatccatgatgtgactaggtatgaacggtattttatttttgtgcaacatgctaac |
106 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25933941 |
gatgaaaccagacttgttctaagtatgatgttataaattcactcaatccatgatgtaactacgtatgaacggtattttatttttgtgcagcatgctaac |
25933843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 28958381 - 28958320
Alignment:
| Q |
228 |
ttcttcaccttattcgaactgaaacatgtcttctacatcaatgtcattatcaagaagcttaa |
289 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28958381 |
ttctccaccttcttcgaacctaaacatgtcttctacatcaacctcattatcaagaagcttaa |
28958320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 32493938 - 32494005
Alignment:
| Q |
219 |
catcagtctttcttcaccttattcgaactgaaacatgtcttctacatcaatgtcattatcaagaagctt |
287 |
Q |
| |
|
||||| || |||| |||||||||| ||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
32493938 |
catcactccttctccaccttattcaaaca-aaacatgtcttctaaatcaacgtcattatcaagaagctt |
32494005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 291
Target Start/End: Complemental strand, 8168826 - 8168718
Alignment:
| Q |
184 |
ctcgccataatatactcagccttaagatacaaccgcatcagtctttcttcaccttattcgaactgaaacatgtcttctacatcaatgtcatt-atcaaga |
282 |
Q |
| |
|
|||| |||||| |||||| | |||| |||||||| |||| ||| ||||| | | | ||||||| |||||| | || ||||||||||||||| |||||| |
|
|
| T |
8168826 |
ctcgacataatctactcaactttaacatacaaccacatcggtccttctttatcctcttcgaaccaaaacatatattttacatcaatgtcattcctcaaga |
8168727 |
T |
|
| Q |
283 |
agcttaaaa |
291 |
Q |
| |
|
||||||||| |
|
|
| T |
8168726 |
agcttaaaa |
8168718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University