View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4584_high_1 (Length: 256)
Name: NF4584_high_1
Description: NF4584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4584_high_1 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 32569712 - 32569937
Alignment:
| Q |
17 |
atgaatccatccttcaacaacaaacatatctcacaggatttggaaacaaggaaaacaacatcacaacaataatttcataaacaaatattgctactgccac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32569712 |
atgaatccatccttcaacaacaaacatatctcacaggatttggaaacaaggaaaacaacatcacaacaataatttcataaacaaatattgctactgccac |
32569811 |
T |
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| Q |
117 |
cccaattaactactctgcatgccagaaactgtgttactgataaatctagaaattgtcttagtttttatattcacataaaagccaaaacagatcacgcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32569812 |
cccaattaactactctgcatgccagaaactgtgttactgataaatctagaaattgtcttagtttttatattcacataaaagccaaaacagatcacgcaat |
32569911 |
T |
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| Q |
217 |
ttgaagtactattttttatttcttaa |
242 |
Q |
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|||||||||||||||| |||| |||| |
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| T |
32569912 |
ttgaagtactatttttcattttttaa |
32569937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 4288 - 4134
Alignment:
| Q |
17 |
atgaatccatccttcaacaacaaacatatctcacaggatttggaaacaaggaaaacaacatcacaacaataatttcataaacaaatattgctactgcc-a |
115 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| | |
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| T |
4288 |
atgaatccaaccttcaacaacaaacatatctcacgggatttggaaacagggaaaacaacataacaacaatgatttcataaacaaatattgctactgccaa |
4189 |
T |
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| Q |
116 |
ccccaattaactactctgcatgccagaaactgtgttactgataaatctagaaatt |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4188 |
ccccaattaactactctgcatgccagaaactgtgttactgataaatctagaaatt |
4134 |
T |
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