View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4584_low_3 (Length: 212)
Name: NF4584_low_3
Description: NF4584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4584_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 24422144 - 24422315
Alignment:
| Q |
13 |
atgaagatgaacattaatgtgacagaaattaaggttgaaaatggaagagatagagacagaaagttatacggttttttctgttagaaagaatgttacaaaa |
112 |
Q |
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| T |
24422144 |
atgaagatgaacattaatgtgacagaaattaaggttgaaaatggaagagatagagacagaaagttatacggttttttctgttagaaagaatgttacaaaa |
24422243 |
T |
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| Q |
113 |
tttggagaaaacggcgttggtgcgttaccaataacatttaagaaattggacggctaagatggatggtaagaga |
185 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24422244 |
tttggagaaaac-gcgttggtgcgttaccaataacatttaagaaattggacgactaagatggatggtaagaga |
24422315 |
T |
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