View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4585-Insertion-1 (Length: 1040)
Name: NF4585-Insertion-1
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4585-Insertion-1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 543
Target Start/End: Original strand, 23678817 - 23679362
Alignment:
| Q |
8 |
gaaatctctctctccataatgtgtatatata--gacaaatataggtgtatgtttatatattgatctaaacaaa-tcatgtatttaca--tacattgtata |
102 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
23678817 |
gaaatatctctctccatcatgtgtatatatatagacaaatataggtgtatgtttatatattgatctaaacaaaatcatgtatttacacatacattgtata |
23678916 |
T |
|
| Q |
103 |
ctaattcccctttgaaagcttccagaagcaaggttttttaagagttgttatgtgtctcataagtgaggagtatttctttctgcatgtgtggactcttgac |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| |
|
|
| T |
23678917 |
ctaattcccctttgaaagcttccagaagcaaggttttttaagagttgttatgtgtctcataagtgaggactatttgtttctgcatttgtggactcttgac |
23679016 |
T |
|
| Q |
203 |
ttggctaattggtcgtgaaccctaagaaggaagcttctgtgaaactttcggtccatccttgattattggatgaactctaccatag-------------ga |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23679017 |
ttggctaattggtcgtgaaccctaagaaggaagcttctgtgaaactttcggtccatccttgattattggatgaactctaccatagtgattgaattaaaaa |
23679116 |
T |
|
| Q |
290 |
gtttagtcttgatagaggaaaaaagaaacaaagaaacaatgactttccctccctgtannnnnnnnccttgtgagataagtttgtctcattcttttgcagc |
389 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23679117 |
gtttagtcttgatagaggaaa--------aaagaaacaatgactttccctccctgtattttttttccttgtgagataagtttgtctcattcttttgtagc |
23679208 |
T |
|
| Q |
390 |
ttatggtttattaattcattttgtagaaaaattatacagaatttgacgtcaaaatttgtctgcaaatattcattgtacttccaaactgttgataaatgga |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
23679209 |
ttatggtttattaattcattttgtagaaaaattagacagaatttgacgtcaaaatttgtttgcaaatattcaatgtacttccaaactgttgataaattga |
23679308 |
T |
|
| Q |
490 |
tgtgcacttgcactggatttgctgttttgtatgtacttgtttgttccttacgtg |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23679309 |
tgtgcacttgcactggatttgctgttttgtatgtaattgtttgttccttacgtg |
23679362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 603 - 843
Target Start/End: Original strand, 23679422 - 23679659
Alignment:
| Q |
603 |
ttagcaaaatataaatttggttgagatcaaaacacatgacgaaggaaaaaa-gataaaa-tagaaaggtaggataaagtgcttactgagattagacccac |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23679422 |
ttagcaaaatataaatttggttgagatcaaaacacatgacgaaggaaaaaaagataaaaatagaaaggtaggataaagttcttactgagattagacccac |
23679521 |
T |
|
| Q |
701 |
tttgacctgaataagtgagttattttttcttatcaatctaataacccaccaatacgtcaagttagattgggtgggtcaccacaacagttgtaacccatac |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23679522 |
tttgacctgaataagtgagttattttttcttatcaatctaataacccaccaataagtcaagttagat----tgggtcaccacaacagttgtaacccatac |
23679617 |
T |
|
| Q |
801 |
tagcatatccacatatgggattagttgttaaatactgattaat |
843 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
23679618 |
tagcatatccacatat-ggattagttgttaaatattgattaat |
23679659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 858 - 1040
Target Start/End: Original strand, 23679727 - 23679913
Alignment:
| Q |
858 |
ttaacaataaaca--gttttttcgtccatgttttatcctcactcacatacattgtnnnnnnn--cgttctaagacacattccactattctttgggaaatt |
953 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23679727 |
ttaacaataaacaaagttttttcatccatgttttatcctcactcacatgcatagtaaaaaaaaacgttctaagacacattccactattctttgggaaatt |
23679826 |
T |
|
| Q |
954 |
caaaatcaacggaaccaacaaagagaagctataaataatgtatttcagc-acatttgtaaatc-acg-ttttgaatatgtggaaaacaca |
1040 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
23679827 |
caaaatcaatggaaccaacaaagagaagctataaataa--tatttcagcaacatttgtaaatcaacgtttttgaatatgt-gaaaacaca |
23679913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University