View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4585-Insertion-2 (Length: 798)

Name: NF4585-Insertion-2
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4585-Insertion-2
NF4585-Insertion-2
[»] chr1 (11 HSPs)
chr1 (8-347)||(7495249-7495588)
chr1 (324-655)||(7488081-7488416)
chr1 (654-798)||(7499702-7499845)
chr1 (89-466)||(7474982-7475354)
chr1 (479-611)||(7475400-7475532)
chr1 (674-798)||(8139017-8139134)
chr1 (147-272)||(6944002-6944130)
chr1 (549-607)||(6943675-6943733)
chr1 (145-196)||(7873375-7873426)
chr1 (657-687)||(8139168-8139198)
chr1 (146-188)||(13877808-13877850)
[»] chr4 (2 HSPs)
chr4 (147-186)||(31103692-31103731)
chr4 (148-186)||(31097139-31097177)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 7495249 - 7495588
Alignment:
Q  8 aacccttgatctcggcaacattatcccattgaaaactgcgagagaagattggccctctgagcgtgtgaaacttgttgctgtgaaagtcaaaacatagaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7495249 aacccttgatctcggcaacattatcccattgaaaactgcgagagaagattggccctctgagcgtgtgaaacttgttgctgtgaaagtcaaaacatagaat 7495348  T
Q  108 atttgcagcataatcattgggattgtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcatg 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7495349 atttgcagcataatcattgggatagtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcgtg 7495448  T
Q  208 atgatagttaaaggatgaggatgttgagtaggggtacataatttagtacttagattataaacttctgcgaaggaaatataatgtttcgttgtcacagagc 307  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  7495449 atgatagttaaaggatgaggatgttgagtaggggtccataatttagtacttagattataaacttccgcgaaggaaatataatgtttcattgtcacagagc 7495548  T
Q  308 aataattgatatgaaatttcacagctttgaagttgatgtt 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7495549 aataattgatatgaaatttcacagctttgaagttgatgtt 7495588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 324 - 655
Target Start/End: Original strand, 7488081 - 7488416
Alignment:
Q  324 tttcacagctttgaagttgatgttgtttggatcatcagcaccgaaaccatacatgcgtgagtcgttgtcaaggcagagactcggaggaacacggtggacc 423  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  7488081 tttcacaactttgaagttgatgttgttgggatcatcggcaccgaaaccatacatgcatgagtcgttatcaaggcagagactcggaggaacacggtggacc 7488180  T
Q  424 tctctag-ggttgggttccacataattaactcatcgagacaacttttatggaaccgacacaaacgtttaagacagaaaacaccgttgcaactaccatagg 522  Q
    |||||||  || ||||||||||||||||||||||| |||||||| ||||| |||| |||||||| ||  ||||||||||| || |||||||||||||| |    
T  7488181 tctctagttgtagggttccacataattaactcatcaagacaactcttatgaaaccaacacaaaccttggagacagaaaacgccattgcaactaccatatg 7488280  T
Q  523 attctattcttat---aggatgaaagacgttgttggaaaagaagggtttgatgtgtgttacgttgtcacatgagagaagggttacatagggtattgtttt 619  Q
    |||| ||||||||   ||   || |   | |||||||||||| || |||||||||| ||||| ||| |||||||||||| |||||||||||| ||||||     
T  7488281 attccattcttataaaagtgcgacaattgctgttggaaaagagggatttgatgtgtattacggtgtgacatgagagaagagttacatagggttttgtttc 7488380  T
Q  620 ataaagaatcatgagactatggctatcagacatgtt 655  Q
    || ||| ||||||||| || | ||||||||||||||    
T  7488381 atgaaggatcatgagattaggactatcagacatgtt 7488416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 654 - 798
Target Start/End: Original strand, 7499702 - 7499845
Alignment:
Q  654 ttcatgatcaagaaacataaaaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatataaacaattagatcagacttcagagc 753  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7499702 ttcatgatctagaaacataaaaaactgagacatcattctaaaaccagccatgtattaacagatagtgc-atatataaacaattagatcagacttcagagc 7499800  T
Q  754 cacagaaacttaagaactgttattgaagaataatttttcccatta 798  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  7499801 cacagaaactttagaactgttattgaagaataatttttcccatta 7499845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 89 - 466
Target Start/End: Original strand, 7474982 - 7475354
Alignment:
Q  89 gaaagtcaaaacatagaatatttgcagcataatcattgggattgtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtattt 188  Q
    |||||| ||| ||||| ||||||||| ||| ||||||| ||| | |  ||| ||| | |||||||||||||||||  || ||||||||| |||| |||||    
T  7474982 gaaagttaaagcataggatatttgcaacatcatcattgcgatagaagaatgcattgtttgtaatccaatgataaatgccgttaacaagattgttatattt 7475081  T
Q  189 agaaggacgttgacgcatgatgatagttaaaggatgaggatgttgagtaggggtacataatttagtacttagattataaacttctgcgaaggaaatataa 288  Q
     || |||  ||  ||  |||||||||| |||||| ||| |||| | ||||| || ||| ||||||||| |||| |||||||||| ||  | |||||||||    
T  7475082 ggagggaatttttcgtgtgatgatagtaaaaggaggagcatgtagggtaggagtccatgatttagtacctagactataaacttccgcccatgaaatataa 7475181  T
Q  289 tgtttcgttgtcacagagcaataattgatatgaaatttcacagctttgaagttgatgttgtttggatcatcagcaccgaaaccatacatgcgtgagtcgt 388  Q
    |||||| || ||     | |||| |||| ||| | ||||||| ||||||| |  ||| ||||||||||||| ||||| |||||||||||   ||| | |     
T  7475182 tgtttc-ttctc-----gtaatacttgacatggagtttcacaactttgaaatcaatgatgtttggatcatctgcaccaaaaccatacatagatgatttgg 7475275  T
Q  389 tgtcaaggcagagactcggaggaacacggtggacctctctag-ggttgggttccacataattaactcatcgagacaact 466  Q
    | || ||||||  | | || |||| ||| |||||||||||||  ||||||||||| |||||||||||||| ||||||||    
T  7475276 tatcgaggcagctagtagggggaatacgatggacctctctagttgttgggttccaaataattaactcatctagacaact 7475354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 611
Target Start/End: Original strand, 7475400 - 7475532
Alignment:
Q  479 acacaaacgtttaagacagaaaacaccgttgcaactaccataggattctattcttataggatgaaagacgttgttggaaaagaagggtttgatgtgtgtt 578  Q
    |||||||| ||| |||||||||||||| ||| |||||||||| ||||| ||| ||||||| |||  |  |||| ||||||||  || |||||||||  ||    
T  7475400 acacaaacctttgagacagaaaacaccattgaaactaccatatgattcaattgttataggttgatgggagttgctggaaaagggggatttgatgtgcatt 7475499  T
Q  579 acgttgtcacatgagagaagggttacatagggt 611  Q
    | |||||||| |||||||||||||| |||||||    
T  7475500 aggttgtcacgtgagagaagggttatatagggt 7475532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 674 - 798
Target Start/End: Complemental strand, 8139134 - 8139017
Alignment:
Q  674 aaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatataaa-caattagatcagacttcagagccacagaaacttaagaactg 772  Q
    ||||||||||||| |||| |||| ||||||||||||||| |||||||| ||| ||||| ||||||||| |||       ||||||||||||| |||||||    
T  8139134 aaaactgagacataattccaaagtcagccatgtattaactgatagtgc-atacataaaacaattagatgaga-------gccacagaaactttagaactg 8139043  T
Q  773 ttattgaagaataatttttcccatta 798  Q
    |||  |||||||||||||||||||||    
T  8139042 ttacggaagaataatttttcccatta 8139017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 272
Target Start/End: Complemental strand, 6944130 - 6944002
Alignment:
Q  147 tgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcatgatgatagttaa---aggatgaggatgttgagtaggggta 243  Q
    |||||||||||||||||| || |||||||||||||| |||||  | |||| ||||||  |||||||||| ||   |||| |||||||| | ||||||||     
T  6944130 tgtaatccaatgataaacgccgttaacaagagtgttatatttgaagggacattgacgtgtgatgatagtaaaaggaggaggaggatgtcgggtaggggtc 6944031  T
Q  244 cataatttagtacttagattataaacttc 272  Q
    ||| |||||||  ||||| ||||||||||    
T  6944030 catgatttagtgattagactataaacttc 6944002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 607
Target Start/End: Complemental strand, 6943733 - 6943675
Alignment:
Q  549 ttgttggaaaagaagggtttgatgtgtgttacgttgtcacatgagagaagggttacata 607  Q
    ||||||||||||  || |||||||||| ||| |||||||||||||||||||||||||||    
T  6943733 ttgttggaaaagggggatttgatgtgtattaggttgtcacatgagagaagggttacata 6943675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 7873426 - 7873375
Alignment:
Q  145 tctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggac 196  Q
    |||||||||||||||||||| || |||||||||||||| ||| |||||||||    
T  7873426 tctgtaatccaatgataaacgccgttaacaagagtgttatatctagaaggac 7873375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 687
Target Start/End: Complemental strand, 8139198 - 8139168
Alignment:
Q  657 atgatcaagaaacataaaaaactgagacatc 687  Q
    |||||||||||||||||||||||||||||||    
T  8139198 atgatcaagaaacataaaaaactgagacatc 8139168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 13877808 - 13877850
Alignment:
Q  146 ctgtaatccaatgataaacaccattaacaagagtgttgtattt 188  Q
    ||||||||||||||||||  |||||||||||| ||||||||||    
T  13877808 ctgtaatccaatgataaatgccattaacaagaatgttgtattt 13877850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 31103692 - 31103731
Alignment:
Q  147 tgtaatccaatgataaacaccattaacaagagtgttgtat 186  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  31103692 tgtaatccaataataaacaccgttaacaagagtgttgtat 31103731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 31097139 - 31097177
Alignment:
Q  148 gtaatccaatgataaacaccattaacaagagtgttgtat 186  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  31097139 gtaatccaatgataaacaccgttagcaagagtgttgtat 31097177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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