View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4585-Insertion-3 (Length: 744)
Name: NF4585-Insertion-3
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4585-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Original strand, 54848207 - 54848702
Alignment:
| Q |
8 |
cggttgaggatttgaagaaaccaaaacatcctgatgcaaagaaaagaaagaaacattctcatagaaaggaattcatcaaccttaatccatatcattgtcg |
107 |
Q |
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| T |
54848207 |
cggttgaggatttgaagaaaccaaaacatcctgatgcaaagaaaagaaagaaacattctcataggaaggaattcatcaaccttaatccatatcattgtcg |
54848306 |
T |
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| Q |
108 |
aagggcgccaagttgcactcaattaactacctcatacgtcaatgcttaaaattatttggatgttcacaagaatcagtacatgtttggattgaccttgatt |
207 |
Q |
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| T |
54848307 |
aagggcgccaagttgcactcaattaactacctcatacgtcaatgcttaaaattatttggatgttcacaagaatcagtacatgtttggattgaccttgatt |
54848406 |
T |
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| Q |
208 |
gacaaattta-------------------ttcaagctctaaaacgtagtttttgtcaaaattattatgttcaccataattctgacaatctcagtgtcatt |
288 |
Q |
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| T |
54848407 |
gacaaatttagcgtgacactgttatcttattcaagctctaaaacgtagtttttgtcaaaattattatgttcaccataattctgacaatctcagtgtcatt |
54848506 |
T |
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| Q |
289 |
ccaaacacgtgtttagaatcattcattactctgctttcttcctcatgttgtatatataagttaattattgtttaatatttctagcacttccgcattcatg |
388 |
Q |
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| T |
54848507 |
ccaaacacgtgtttagaatcattcattactctgctttcttcctcatgttgtatatataagttaattattgtttaatatttctagcacttccgcattcatg |
54848606 |
T |
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| Q |
389 |
cggtttatatacattgtacagtttcaatatagaaaaatgaaatcaannnnnnnaaatttatccttctcaacaatataatcttcgccaatgtgatgc |
484 |
Q |
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| T |
54848607 |
cggtttatatacattgtacagtttcaatatagaaaaatgaaatcaatttttttaaatttatccttctcaacaatataatcttcgccaatgtgatgc |
54848702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 544 - 743
Target Start/End: Original strand, 54848675 - 54848870
Alignment:
| Q |
544 |
aacactataatcttcaccaatgtgatgctatcttgattcaataattgtaagatttctatatatttgaacttgagactacctattaaatttataagagatt |
643 |
Q |
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|||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
54848675 |
aacaatataatcttcgccaatgtgatgctatctcgattcaataattgtaagatttctct----ttgaacttgagactacctattaaatttataagagatt |
54848770 |
T |
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| Q |
644 |
tttatcatttgacccgttgatcattgattcaannnnnnnncttccatatatgctcatatgtttattattctatattttgacatcatgaattgactcatct |
743 |
Q |
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| T |
54848771 |
ttaatcatttgacccgttgatcattgattcaattttttttcttccatatatgctcatatgtttattattctatattttgacatcatgaattgactcatct |
54848870 |
T |
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