View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4585-Insertion-5 (Length: 215)

Name: NF4585-Insertion-5
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4585-Insertion-5
NF4585-Insertion-5
[»] chr4 (31 HSPs)
chr4 (5-215)||(27469485-27469695)
chr4 (7-165)||(27502042-27502200)
chr4 (7-215)||(27487008-27487219)
chr4 (7-215)||(27476712-27476920)
chr4 (8-211)||(27460507-27460710)
chr4 (5-215)||(27505607-27505817)
chr4 (5-215)||(27523307-27523518)
chr4 (7-211)||(27479930-27480134)
chr4 (5-211)||(27516514-27516720)
chr4 (5-215)||(27526017-27526227)
chr4 (5-215)||(27513681-27513891)
chr4 (5-211)||(27466850-27467054)
chr4 (58-211)||(27473921-27474074)
chr4 (70-211)||(27498444-27498585)
chr4 (75-157)||(27557572-27557654)
chr4 (78-213)||(27444772-27444907)
chr4 (75-165)||(27501392-27501482)
chr4 (78-213)||(27431126-27431261)
chr4 (81-211)||(27500319-27500449)
chr4 (70-215)||(27502777-27502922)
chr4 (78-157)||(27554392-27554471)
chr4 (59-151)||(27567344-27567436)
chr4 (100-214)||(27412690-27412804)
chr4 (70-144)||(27507783-27507857)
chr4 (87-156)||(27495620-27495689)
chr4 (93-160)||(27559233-27559300)
chr4 (99-157)||(27411455-27411513)
chr4 (93-151)||(27414297-27414355)
chr4 (101-151)||(27419072-27419122)
chr4 (101-151)||(27571712-27571762)
chr4 (93-162)||(27585766-27585835)
[»] chr5 (3 HSPs)
chr5 (38-215)||(1759273-1759454)
chr5 (70-215)||(1754212-1754356)
chr5 (100-215)||(1756757-1756872)
[»] chr3 (9 HSPs)
chr3 (62-178)||(38028728-38028844)
chr3 (62-178)||(38040043-38040159)
chr3 (94-178)||(50911863-50911947)
chr3 (62-137)||(50904754-50904829)
chr3 (86-163)||(38024861-38024938)
chr3 (86-163)||(38031313-38031390)
chr3 (62-215)||(55084811-55084964)
chr3 (62-178)||(38036755-38036871)
chr3 (84-144)||(48840696-48840756)
[»] chr8 (1 HSPs)
chr8 (62-178)||(21604716-21604832)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 27469695 - 27469485
Alignment:
Q  5 acaaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27469695 acaaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaa 27469596  T
Q  105 ggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaaggga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||    
T  27469595 ggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgtaatgatgtttgcttcaaatatgatataggga 27469496  T
Q  205 tcacaaaccgc 215  Q
    |||||||||||    
T  27469495 tcacaaaccgc 27469485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 27502042 - 27502200
Alignment:
Q  7 aaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaagg 106  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27502042 aaaaatgtgtcaaatatctacgtcagtcctatgatatcttcaaagagctaattcaatttaagtgagaggtgatatctaagaaaatgtcttctctgcaagg 27502141  T
Q  107 aatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaaca 165  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  27502142 aatagttagaccacccattggatgatcatattcaaattgttcctcagcttggttcaaca 27502200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 27487219 - 27487008
Alignment:
Q  7 aaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaat---tcaattgaagtgagaggtgatatctaagaaaatttcttctctgca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||| |||||||| || |||||||||||||| |||||| ||||    
T  27487219 aaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagaactaataattcaattcaagtgagaagtaatatctaagaaaatgtcttctttgca 27487120  T
Q  104 aggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaaggg 203  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||| || ||| || |||| ||  || || ||||||||||||    
T  27487119 aggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggttggtttaagtatgataaaggg 27487020  T
Q  204 atcacaaaccgc 215  Q
    ||||||||||||    
T  27487019 atcacaaaccgc 27487008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 27476920 - 27476712
Alignment:
Q  7 aaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaagg 106  Q
    ||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||    
T  27476920 aaaaatgagtaaaatatctacgtcagtcctatgatatcttcaaagagctaattcaatttaagtgagaggtaatatccaagaaaatgtcttctctgcaagg 27476821  T
Q  107 aatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaagggatc 206  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||| ||| ||||| | ||  ||||| ||||||| ||| |||    
T  27476820 aatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaatgaggtttggttcaagtatgatacaggaatc 27476721  T
Q  207 acaaaccgc 215  Q
    |||||||||    
T  27476720 acaaaccgc 27476712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 27460710 - 27460507
Alignment:
Q  8 aaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaagga 107  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||    
T  27460710 aaaatgggtcaaataactacgtcagtcctatgatatcttcaaagagctaattcaaattaagtgagaggtgatatccaagaaaatgtcttctctgcaagga 27460611  T
Q  108 atagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaagggatca 207  Q
    || || ||||||||||||||||| ||||||||||||||||| |||  |||||||| || || ||| ||||||  || |||||||||||||| ||||||||    
T  27460610 atggtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatca 27460511  T
Q  208 caaa 211  Q
    ||||    
T  27460510 caaa 27460507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 27505607 - 27505817
Alignment:
Q  5 acaaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaa 104  Q
    |||||||||||||| |||||||| | ||||| |||||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||    
T  27505607 acaaaaatgggtcaaatatctacattagtccaatgatatcttcaaagagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaa 27505706  T
Q  105 ggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaaggga 204  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| || ||| ||||| | ||  ||||| ||||||| ||| |    
T  27505707 ggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatgaggtttggttcaagtatgatacaggaa 27505806  T
Q  205 tcacaaaccgc 215  Q
    |||||||||||    
T  27505807 tcacaaaccgc 27505817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 27523307 - 27523518
Alignment:
Q  5 acaaaaatgggtcagatatctacgtca-gtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgca 103  Q
    |||||| ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||| ||||    
T  27523307 acaaaactgggtcaaatatctatgtcatgtcctatgatatcttcaaagagctaattcaattcaagtgagaagtaatatctaagaaaatgtcttctttgca 27523406  T
Q  104 aggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaaggg 203  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| || |||| |||||||| || ||| ||||| | ||  ||||||||||||| |||     
T  27523407 aggaatagttagaccacccattggatggtcatattcaaattgttcctcggcttcgctcaacaattcttggaatgaagtttggttcaaatatgatacagga 27523506  T
Q  204 atcacaaaccgc 215  Q
    ||||||||||||    
T  27523507 atcacaaaccgc 27523518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 27480134 - 27479930
Alignment:
Q  7 aaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaagg 106  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||| || |||||||||| ||||||||  | |||||||||||||| ||||||||||||||    
T  27480134 aaaaatggatcaaataactacgtcagtcctatgatatcttcaaaaaggtaattcaattcaagtgagaattaatatctaagaaaatgtcttctctgcaagg 27480035  T
Q  107 aatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaagggatc 206  Q
    ||| || ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||  ||||| ||||||| ||  ||||| ||||||| ||| |||    
T  27480034 aatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaacttttggaatgatgtttggttcaagtatgatacaggaatc 27479935  T
Q  207 acaaa 211  Q
    |||||    
T  27479934 acaaa 27479930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 27516514 - 27516720
Alignment:
Q  5 acaaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaa 104  Q
    |||||||| ||||||||||||| |||| || | | |||||| ||  |||||| ||||||| |||| ||| |||||||||||||||| ||||||| |||||    
T  27516514 acaaaaattggtcagatatctatgtcaatcttctaatatctgcatggagctacttcaattcaagttagaagtgatatctaagaaaacttcttctttgcaa 27516613  T
Q  105 ggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaaggga 204  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| |||||| || ||| ||||||  || |||||||||||||| |||||    
T  27516614 ggaatagtgagaccccccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatgatttttgcttcaaatatgatataggga 27516713  T
Q  205 tcacaaa 211  Q
    |||||||    
T  27516714 tcacaaa 27516720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 27526017 - 27526227
Alignment:
Q  5 acaaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaa 104  Q
    |||||||||||||| |||||||||||| || |||| |||||||  ||||| ||||||||| ||  |||| ||||| ||||||||||  ||||||||||||    
T  27526017 acaaaaatgggtcaaatatctacgtcaatcttatggtatcttccgagagccaattcaattcaaacgagaagtgatctctaagaaaacgtcttctctgcaa 27526116  T
Q  105 ggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaaggga 204  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||||| || ||| ||||| | ||  ||||| ||||||| ||| |    
T  27526117 ggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaattcttggaatgaggtttggttcaagtatgatacaggaa 27526216  T
Q  205 tcacaaaccgc 215  Q
    |||||||||||    
T  27526217 tcacaaaccgc 27526227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 27513681 - 27513891
Alignment:
Q  5 acaaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaa 104  Q
    |||||| ||||||| |||||||||||| | ||||| || |||||||||  | |||||||| ||| |||| |||||||||||||| | |||||||||||||    
T  27513681 acaaaattgggtcaaatatctacgtcaatactatgctaacttcaaagatttgattcaattcaagcgagaagtgatatctaagaatacttcttctctgcaa 27513780  T
Q  105 ggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaaggga 204  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||||| || ||| || || | ||  ||||| |||||||  ||||    
T  27513781 ggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttcaacaattcttggaacgaggtttggttcaagtatgatattggga 27513880  T
Q  205 tcacaaaccgc 215  Q
    |||||||||||    
T  27513881 tcacaaaccgc 27513891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 27467054 - 27466850
Alignment:
Q  5 acaaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaa 104  Q
    |||||||| | ||||||||||| |||| || | | |||||||||  |||||| ||||||| |||  ||| ||||| |||||||||| |||||||||||||    
T  27467054 acaaaaattgatcagatatctatgtcaatcttctaatatcttca--gagctacttcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaa 27466957  T
Q  105 ggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaaggga 204  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||| ||| ||| ||  || |||||||||||||| |||||    
T  27466956 ggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaataatttttgcttcaaatatgatataggga 27466857  T
Q  205 tcacaaa 211  Q
    |||||||    
T  27466856 tcacaaa 27466850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 27474074 - 27473921
Alignment:
Q  58 ttcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttg 157  Q
    ||||||| ||| |||| ||||| ||||||||||  ||||||| ||||||||| || ||||||||||||||||| ||||||||||||||||| |||  |||    
T  27474074 ttcaattcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttg 27473975  T
Q  158 gctcaacagtttttgtaatgatgatttcttcaaatatgataaagggatcacaaa 211  Q
    ||||| || || ||| ||||||  || |||||||||||||| ||||||||||||    
T  27473974 gctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaa 27473921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 27498585 - 27498444
Alignment:
Q  70 gagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttt 169  Q
    |||| |||||||||||||| || ||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||| || |||||| ||||||  |     
T  27498585 gagaagtgatatctaagaacatgtcttctccgcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtc 27498486  T
Q  170 ttgtaatgatgatttcttcaaatatgataaagggatcacaaa 211  Q
    ||| || |||| ||  ||||| ||||||| ||||||||||||    
T  27498485 ttggaacgatggttggttcaagtatgatatagggatcacaaa 27498444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 27557654 - 27557572
Alignment:
Q  75 gtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttg 157  Q
    ||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||  |||||||||||||||| ||||||||    
T  27557654 gtgatatctaagaaaacatcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttg 27557572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 27444772 - 27444907
Alignment:
Q  78 atatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatg 177  Q
    |||||||||||||  ||||||||||||||||| || ||||||||||||||||| |||||| | |||||||| || |||||  |||| | || ||| ||||    
T  27444772 atatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatg 27444871  T
Q  178 atgatttcttcaaatatgataaagggatcacaaacc 213  Q
    ||||||   |||| |||||||  |||||||||||||    
T  27444872 atgattggctcaagtatgatattgggatcacaaacc 27444907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 27501482 - 27501392
Alignment:
Q  75 gtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaaca 165  Q
    |||||||||||||| || |||||||| ||||||||||| ||||||||| ||||||| || |||||||||||||| || |||||| ||||||    
T  27501482 gtgatatctaagaacatgtcttctctacaaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaaca 27501392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 27431126 - 27431261
Alignment:
Q  78 atatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatg 177  Q
    |||| ||||||||  ||||||||||||||||| || ||||||||  ||||||| |||||| |||||||||| || |||||  |||||| || ||| ||||    
T  27431126 atatttaagaaaacgtcttctctgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatg 27431225  T
Q  178 atgatttcttcaaatatgataaagggatcacaaacc 213  Q
    | | ||  ||||| |||||||  |||||||||||||    
T  27431226 acggttggttcaagtatgatattgggatcacaaacc 27431261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 27500319 - 27500449
Alignment:
Q  81 tctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatg 180  Q
    ||||||||||  |||||||||||||||||||| |  |||||||||||||| |||||| | || |||||||||| |||||||| || || ||| |||||      
T  27500319 tctaagaaaaggtcttctctgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcagattggctcagcaattcttggaatgaac 27500418  T
Q  181 atttcttcaaatatgataaagggatcacaaa 211  Q
     ||  || || ||||||| ||||||||||||    
T  27500419 tttggtttaagtatgatatagggatcacaaa 27500449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 27502777 - 27502922
Alignment:
Q  70 gagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttt 169  Q
    |||| |||||||||| |||||  ||||||   ||||||||||| ||||||||||||||||| |||||| |||||| |||  |||||||||||| ||  |     
T  27502777 gagaagtgatatctacgaaaaaatcttcttcacaaggaatagtaagaccacccattggatggtcatatccaaattcttccacagcttggctcagcaagtc 27502876  T
Q  170 ttgtaatgatgatttcttcaaatatgataaagggatcacaaaccgc 215  Q
    ||| ||||| | ||  ||||||||||| |  || ||||||||||||    
T  27502877 ttgaaatgaagtttgattcaaatatgacattggaatcacaaaccgc 27502922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 27554471 - 27554392
Alignment:
Q  78 atatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttg 157  Q
    |||||||||||||  |||||||| |||||||| || |||| |||| ||||||| |||||| |||||||||| ||||||||    
T  27554471 atatctaagaaaacgtcttctctacaaggaattgtgagactacccgttggatgatcatatccaaattgttcctcagcttg 27554392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 27567436 - 27567344
Alignment:
Q  59 tcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttc 151  Q
    |||||| |||||||| ||||  |||||||||   ||||| ||||||||||| || ||||||||||||||||| |||||  |||||| ||||||    
T  27567436 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttc 27567344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 27412804 - 27412690
Alignment:
Q  100 tgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataa 199  Q
    |||||||||| || || |||||||||||||| |||||| |||| | |||||||||||| ||||| |  | ||| ||| ||| ||  ||||| |||||||     
T  27412804 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat 27412705  T
Q  200 agggatcacaaaccg 214  Q
     ||||||||||||||    
T  27412704 tgggatcacaaaccg 27412690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 27507783 - 27507857
Alignment:
Q  70 gagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaatt 144  Q
    |||| ||||||||||||||||  ||||||   |||||||| || ||||||||||||||||| |||||| ||||||    
T  27507783 gagaagtgatatctaagaaaagatcttcttcacaaggaattgtaagaccacccattggatggtcatatccaaatt 27507857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 27495689 - 27495620
Alignment:
Q  87 aaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagctt 156  Q
    ||||| ||||||||||||||||| || ||||||||||||||||| | | || |||| | |||||||||||    
T  27495689 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 27495620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 27559233 - 27559300
Alignment:
Q  93 tcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggct 160  Q
    ||||| ||||||||||| || ||||||||||||||||| |||||| |||| | |||||| | ||||||    
T  27559233 tcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttctgattggct 27559300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 27411455 - 27411513
Alignment:
Q  99 ctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttg 157  Q
    ||||||||||| || ||||||||||| ||||| |||||| |||||| |||||| |||||    
T  27411455 ctgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttg 27411513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 27414297 - 27414355
Alignment:
Q  93 tcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttc 151  Q
    ||||| ||||| ||||| || ||||||||||||||||| |||||| |||||| ||||||    
T  27414297 tcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttc 27414355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 27419072 - 27419122
Alignment:
Q  101 gcaaggaatagttagaccacccattggatgttcatattcaaattgttcttc 151  Q
    ||||||||| || ||||||||||||||||| |||||| |||||| ||||||    
T  27419072 gcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttc 27419122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 27571762 - 27571712
Alignment:
Q  101 gcaaggaatagttagaccacccattggatgttcatattcaaattgttcttc 151  Q
    ||||||||| || ||||||||||||||||| |||||| |||||| ||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttc 27571712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 27585835 - 27585766
Alignment:
Q  93 tcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctca 162  Q
    |||||| |||||||||| || ||||| ||||||||||| |||||| |||| | |||||| ||||| ||||    
T  27585835 tcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgactca 27585766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 1759454 - 1759273
Alignment:
Q  38 tgatatcttcaaagagctaattcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatat 137  Q
    |||||| |||| |||||| |||||||| |||||||| |||||||||||||||| ||||||||||||| |||| || ||||||||||||||||| |  |||    
T  1759454 tgatattttcagagagctgattcaattcaagtgagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagaccacccattggatggttgtat 1759355  T
Q  138 tcaaattgttcttca----gcttggctcaacagtttttgtaatgatgatttcttcaaatatgataaagggatcacaaaccgc 215  Q
    ||||||||||| |||    ||||||||||||| || ||| ||||||| ||  || |||||||||| ||| ||||||||||||    
T  1759354 tcaaattgttcctcagcttgcttggctcaacaattcttggaatgatgtttggtttaaatatgatacaggaatcacaaaccgc 1759273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 1754212 - 1754356
Alignment:
Q  70 gagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttt 169  Q
    |||| ||||||||||||||||  | |||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||| || | | | || |||    
T  1754212 gagaagtgatatctaagaaaaggt-ttctctacaaggaatagtgagaccacccatcggatgatcatattcaaactgttcctcagatttgtttagcaattt 1754310  T
Q  170 ttgtaatgatgatttcttcaaatatgataaagggatcacaaaccgc 215  Q
    ||| ||||| ||||  ||||| |||||||  |||||||||||||||    
T  1754311 ttgaaatgacgattggttcaagtatgatacggggatcacaaaccgc 1754356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 1756757 - 1756872
Alignment:
Q  100 tgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatgatgatttcttcaaatatgataa 199  Q
    |||||||||| || || |||||||| || || |||||| |||||| |||||||||||| |||||||  | ||| || |||| ||  ||||| |||||||     
T  1756757 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatat 1756856  T
Q  200 agggatcacaaaccgc 215  Q
     |||||||||||||||    
T  1756857 tgggatcacaaaccgc 1756872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 38028728 - 38028844
Alignment:
Q  62 attgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctc 161  Q
    |||||||||||| || ||||  |||||||  |||||| |||||||||| || || || ||||||||||| |||||| |||||| ||| || ||||| |||    
T  38028728 attgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttgactc 38028827  T
Q  162 aacagtttttgtaatga 178  Q
    ||||| ||||| |||||    
T  38028828 aacaggttttgaaatga 38028844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 38040043 - 38040159
Alignment:
Q  62 attgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctc 161  Q
    |||||||||||| || ||||  |||||||  |||||| |||||||||| || || || ||||||||||| |||||| | |||| ||| || ||||| |||    
T  38040043 attgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactc 38040142  T
Q  162 aacagtttttgtaatga 178  Q
    ||||| ||||| |||||    
T  38040143 aacaggttttgaaatga 38040159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 50911863 - 50911947
Alignment:
Q  94 cttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagtttttgtaatga 178  Q
    ||||| |||||||||| ||||| ||||||||||| || |||||| |||||| ||| || ||||| |||||||  ||||| |||||    
T  50911863 cttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatga 50911947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 50904754 - 50904829
Alignment:
Q  62 attgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatat 137  Q
    ||||||| |||| |||||||  || ||||  ||||||||||||||||| || || |||||||||||||| ||||||    
T  50904754 attgaagcgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatgatcatat 50904829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 38024861 - 38024938
Alignment:
Q  86 gaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaa 163  Q
    |||||| |||||| |||||||||| || || ||||||||||| || |||||| |||||| ||| || ||||| |||||    
T  38024861 gaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaa 38024938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 38031313 - 38031390
Alignment:
Q  86 gaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaa 163  Q
    |||||| |||||| |||||||||| || || ||||||||||| || |||||| |||||| ||| || ||||| |||||    
T  38031313 gaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaa 38031390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 55084964 - 55084811
Alignment:
Q  62 attgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctc 161  Q
    ||||||| |||| || ||||  |||||||  |||||| |||||||||| || || |||||||||||||| || ||| |||||| ||| || ||  | |||    
T  55084964 attgaagcgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactc 55084865  T
Q  162 aacagtttttgtaatgatgatttcttcaaatatgataaagggatcacaaaccgc 215  Q
    ||||  | ||| ||||||| ||  ||||| || || | ||||||||||||||||    
T  55084864 aacaagtcttgaaatgatggttggttcaagtaagacatagggatcacaaaccgc 55084811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 38036755 - 38036871
Alignment:
Q  62 attgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctc 161  Q
    |||||||||||| || ||||  |||||||  | |||| |||||||||| || || || ||||||||||| |||||| | |||| ||| || ||||| |||    
T  38036755 attgaagtgagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactc 38036854  T
Q  162 aacagtttttgtaatga 178  Q
    ||||  ||||| |||||    
T  38036855 aacaaattttgaaatga 38036871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 48840696 - 48840756
Alignment:
Q  84 aagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaatt 144  Q
    |||||||  |||||| |||||||||| || || |||||||||||||| |||||| ||||||    
T  48840696 aagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaatt 48840756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 21604716 - 21604832
Alignment:
Q  62 attgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctc 161  Q
    |||||||||||| || ||||  |||||||  |||||| |||||||||| || || || ||||||||||| |||||| | |||| ||| ||  |||| |||    
T  21604716 attgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatcctaattcttcctcgtcttgactc 21604815  T
Q  162 aacagtttttgtaatga 178  Q
    ||||  ||||| |||||    
T  21604816 aacatgttttgaaatga 21604832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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