View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4585-Insertion-6 (Length: 208)
Name: NF4585-Insertion-6
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4585-Insertion-6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 4e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 4e-94
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 32708796 - 32708992
Alignment:
| Q |
8 |
cttttatggttccctaatccacagaraaaaggaatttcatatatattaatatcttggtgaattcgatctatctagtagtgacgcatgatcaaatatcaac |
107 |
Q |
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| T |
32708796 |
cttttatggttccctaatccacataaaaaaggaatttcatat----tagtatcttggtgaattcgatctatctagtagtgacgcatgatcaaatatcaac |
32708891 |
T |
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| Q |
108 |
actaacacattatatttaggatgtcacaatttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctata |
207 |
Q |
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| T |
32708892 |
actaacacattatatttaggatgtcacaatttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctata |
32708991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 32627340 - 32627407
Alignment:
| Q |
137 |
tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct |
204 |
Q |
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| T |
32627340 |
tttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgct |
32627407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 32703490 - 32703557
Alignment:
| Q |
137 |
tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct |
204 |
Q |
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| T |
32703490 |
tttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgct |
32703557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 27736240 - 27736305
Alignment:
| Q |
139 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct |
204 |
Q |
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| T |
27736240 |
tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgct |
27736305 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 5810967 - 5811032
Alignment:
| Q |
139 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct |
204 |
Q |
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| T |
5810967 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgct |
5811032 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 21943087 - 21943132
Alignment:
| Q |
139 |
tacctgcaagaccatatcattaagagctatagccataagttcccaa |
184 |
Q |
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| T |
21943087 |
tacctgcataaccatatcattaagagccatagccaaaagttcccaa |
21943132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 20116800 - 20116764
Alignment:
| Q |
149 |
accatatcattaagagctatagccataagttcccaaa |
185 |
Q |
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| T |
20116800 |
accatatcattaagagctgtagccaaaagttcccaaa |
20116764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 8030641 - 8030573
Alignment:
| Q |
139 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctata |
207 |
Q |
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| T |
8030641 |
tacctccaagaccatgtcattaagggcaacagcaagaagctcccaaatatagcaacactctttgctata |
8030573 |
T |
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