View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4585-Insertion-7 (Length: 130)
Name: NF4585-Insertion-7
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4585-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 4e-51; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 41315814 - 41315693
Alignment:
| Q |
8 |
catatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtgg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
41315814 |
catatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaagggtagtttccatggtcctggtgg |
41315715 |
T |
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| Q |
108 |
caaattaatcttggaactgtta |
129 |
Q |
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|||||||| | ||||| ||||| |
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| T |
41315714 |
caaattaaccgtggaagtgtta |
41315693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 41321864 - 41321743
Alignment:
| Q |
8 |
catatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtgg |
107 |
Q |
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|||||||||||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
41321864 |
catatttatctgccaaaattttgaagagatgatggggcaatgatctgctgataatctgatgtaagtttcctatgaagggtagtttccatggtcctggtgg |
41321765 |
T |
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| Q |
108 |
caaattaatcttggaactgtta |
129 |
Q |
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|||||||| | ||||| ||||| |
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| T |
41321764 |
caaattaaccgtggaagtgtta |
41321743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 41327781 - 41327679
Alignment:
| Q |
8 |
catatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtgg |
107 |
Q |
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| T |
41327781 |
catatttatctgccaaaattttgaagagatgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtttccatggtcctggtgg |
41327682 |
T |
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| Q |
108 |
caa |
110 |
Q |
| |
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||| |
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| T |
41327681 |
caa |
41327679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 41323883 - 41323781
Alignment:
| Q |
8 |
catatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtgg |
107 |
Q |
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|||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
41323883 |
catatttatcagccaaaattttgaagcggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagttcccatggtccaggtgg |
41323784 |
T |
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| Q |
108 |
caa |
110 |
Q |
| |
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||| |
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| T |
41323783 |
caa |
41323781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 41331767 - 41331692
Alignment:
| Q |
35 |
ggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtggcaa |
110 |
Q |
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| T |
41331767 |
ggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtttccatggtcctggtggcaa |
41331692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 31224688 - 31224611
Alignment:
| Q |
53 |
tgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtggcaaattaatcttggaactgttac |
130 |
Q |
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| T |
31224688 |
tgctaataatttgatgtaagtttcctatgatgggtagtgtccatggtcctggtggtaaattgatattggaattgttac |
31224611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 41336672 - 41336621
Alignment:
| Q |
59 |
taatctgatgtaagtttcctatgaggggtagtctccatggtcctggtggcaa |
110 |
Q |
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| T |
41336672 |
taatctggtgtatgtttcctatgaggggtagtttccatggtcctggtggcaa |
41336621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 41365947 - 41365869
Alignment:
| Q |
35 |
ggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtggcaaatt |
113 |
Q |
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|||||||||||||||| || | ||||||||||||| ||||||||||||||| | | |||||||||| ||||| ||||| |
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| T |
41365947 |
ggtgatggggcaatgaactcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaatt |
41365869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 41285882 - 41285761
Alignment:
| Q |
8 |
catatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtgg |
107 |
Q |
| |
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||||||| ||| |||||| ||| || | |||||||||| ||| || || ||||| ||||||| |||||||||||||| ||| |||||||||| ||||| |
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| T |
41285882 |
catatttctcttccaaaattttgaagcaatgatggggcagtgagctactaataatatgatgtatatttcctatgaggggcagtgtccatggtccaggtgg |
41285783 |
T |
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| Q |
108 |
caaattaatcttggaactgtta |
129 |
Q |
| |
|
||||| || ||||||||||| |
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| T |
41285782 |
taaattgatagtggaactgtta |
41285761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 31179085 - 31179151
Alignment:
| Q |
64 |
tgatgtaagtttcctatgaggggtagtctccatggtcctggtggcaaattaatcttggaactgttac |
130 |
Q |
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| T |
31179085 |
tgatgtatgtttcctatgacgggtagtgtccatggtcctggtggtaaattgatactggaattgttac |
31179151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 31189106 - 31189199
Alignment:
| Q |
37 |
tgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtggcaaattaatcttggaactgttac |
130 |
Q |
| |
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||||| |||||||| |||| |||| ||||| | ||||||||||| ||||||| |||||||||||||||| ||||| || ||||| |||||| |
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| T |
31189106 |
tgatgaggcaatgagttgctaataagttgatgcatgtttcctatgatgggtagtgtccatggtcctggtggtaaattgatactggaattgttac |
31189199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 41358775 - 41358707
Alignment:
| Q |
39 |
atggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtgg |
107 |
Q |
| |
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|||| ||||||| ||||| |||||||||||||||||||||| ||||| | | |||||||||| ||||| |
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| T |
41358775 |
atggagcaatgagctgcttataatctgatgtaagtttcctacaaggggcattgtccatggtccaggtgg |
41358707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 31185586 - 31185662
Alignment:
| Q |
37 |
tgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtctccatggtcctggtggcaaatt |
113 |
Q |
| |
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||||| |||||||| | || ||||| ||||||| ||||||||||| ||||||| ||| ||||||| |||| ||||| |
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| T |
31185586 |
tgatgaggcaatgagtttctaataatttgatgtatgtttcctatgatgggtagtgtccgtggtccttgtggtaaatt |
31185662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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