View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4585_high_6 (Length: 265)
Name: NF4585_high_6
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4585_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 32708800 - 32708561
Alignment:
| Q |
18 |
aaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgat |
117 |
Q |
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| T |
32708800 |
aaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgat |
32708701 |
T |
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| Q |
118 |
cgattgggagtttctgaagtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcactcggcgatggtgcataca |
217 |
Q |
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| T |
32708700 |
cgattgggagtttctgaagtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcacttggcgatggtgcataca |
32708601 |
T |
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| Q |
218 |
atgtgatgcagtgcatgagagccgtttctgaacctttgct |
257 |
Q |
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| T |
32708600 |
atgtcatgcagtgcatgagagccgtttctgaacctttgct |
32708561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 32627121 - 32627031
Alignment:
| Q |
18 |
aaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcattt |
108 |
Q |
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| T |
32627121 |
aaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcattt |
32627031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 27736133 - 27735949
Alignment:
| Q |
35 |
atactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctga |
134 |
Q |
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| T |
27736133 |
atactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaataaattggaggtttctga |
27736034 |
T |
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| Q |
135 |
agtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcactcggcgatggtgcatacaat |
219 |
Q |
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| T |
27736033 |
agttaattggaatgctcttgatgattgtaatgcctttgactttgaatctgaaatgtcagaatcactcagagatgatggatacaat |
27735949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 5810796 - 5810680
Alignment:
| Q |
39 |
tttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtg |
138 |
Q |
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| T |
5810796 |
tttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcaccgaaggatcattctccatcagtcgattagaggtttctgaagta |
5810697 |
T |
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| Q |
139 |
aattggaatgctcttga |
155 |
Q |
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| T |
5810696 |
aattggaatgctcttga |
5810680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 20117936 - 20118000
Alignment:
| Q |
60 |
tccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgg |
124 |
Q |
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|||||||||| | |||||||||||||||||||| | ||||| |||||| |||||||| ||||| |
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| T |
20117936 |
tccatctccaactgaagtgaaattggaagttctaactgaagggtcatttgtcatcgatcaattgg |
20118000 |
T |
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