View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4585_low_1 (Length: 531)
Name: NF4585_low_1
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4585_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Complemental strand, 40107398 - 40106902
Alignment:
| Q |
18 |
ctagggttttgagacaagatccctttgaatgcttgattcagtttatgtgttcttctaataatcatattagtagaattactaaaatggttgattatgtttc |
117 |
Q |
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| T |
40107398 |
ctagggttttgagacaagatccctttgaatgcttgattcagtttatgtgttcttctaataatcatattagtagaattactaaaatggttgattatgtttc |
40107299 |
T |
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| Q |
118 |
gtctctcggaacttacttgggttgcgtcgaaggcttcaatttccacgcttttcctactctgaaccagctttcattagtttctgaacagcaactaagagac |
217 |
Q |
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| T |
40107298 |
gtctctcggaacttacttgggttgcgtcgaaggcttcgatttccacgcttttcctactctgaaccagctttcattagtttctgaacagcaactaagagac |
40107199 |
T |
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| Q |
218 |
gctggttttggttacaggttagtttaggtttagttccttcaataactgttattagtttcgtgtgaatgttaacgtggttactattttcttgatagggcta |
317 |
Q |
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| T |
40107198 |
gctggttttggttacaggttagtttaggtttagttccttcaataactgttattagtttcgtgtgaatgttaacgtggttactattttcttgatagggcta |
40107099 |
T |
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| Q |
318 |
agtatataactggcactgtgaatgttttgcaatcaaaacctgaaggtggggaagaatggctttattctcttcgcaaattggagcttgaagatgtaatatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40107098 |
agtatataactggcactgtgaatgttttgcaatcaaaacctgaaggtggggaagaatggctttattctcttcgcaaattggagcttgaagatgtaatatc |
40106999 |
T |
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| Q |
418 |
tgaactcatcaagttacctggagtgggtcctaaagtggctgcttgtatagctctttactcacttgatcaacaccatgcaattcctgttgatgttcat |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40106998 |
cgaactcatcaagttacctggagtgggtcctaaagtggctgcttgtatagctctttactcacttgatcaacaccatgcaattcctgttgatgttcat |
40106902 |
T |
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