View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4585_low_2 (Length: 426)

Name: NF4585_low_2
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4585_low_2
NF4585_low_2
[»] chr4 (2 HSPs)
chr4 (264-410)||(2464833-2464979)
chr4 (265-409)||(6736143-6736283)
[»] chr2 (5 HSPs)
chr2 (265-409)||(2744302-2744442)
chr2 (265-401)||(45682364-45682496)
chr2 (265-398)||(11951996-11952125)
chr2 (286-409)||(28173852-28173971)
chr2 (358-402)||(28173753-28173797)
[»] chr6 (3 HSPs)
chr6 (265-409)||(29935418-29935558)
chr6 (264-345)||(31291762-31291843)
chr6 (265-308)||(29875168-29875211)
[»] scaffold0312 (1 HSPs)
scaffold0312 (265-402)||(19358-19491)
[»] chr1 (2 HSPs)
chr1 (265-402)||(411079-411212)
chr1 (284-401)||(11109830-11109943)
[»] chr3 (4 HSPs)
chr3 (286-402)||(29896333-29896445)
chr3 (265-317)||(10539958-10540010)
chr3 (292-341)||(13468623-13468672)
chr3 (265-327)||(10525627-10525689)
[»] chr8 (2 HSPs)
chr8 (265-345)||(21542381-21542461)
chr8 (275-343)||(42496796-42496864)
[»] scaffold0608 (1 HSPs)
scaffold0608 (284-401)||(5267-5380)
[»] chr7 (5 HSPs)
chr7 (286-345)||(15688623-15688682)
chr7 (286-345)||(15696216-15696275)
chr7 (286-345)||(15703196-15703255)
chr7 (282-342)||(8554772-8554832)
chr7 (300-352)||(24026049-24026101)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 264 - 410
Target Start/End: Complemental strand, 2464979 - 2464833
Alignment:
Q  264 gtgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttac 363  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2464979 gtgtcacgacccaattttaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataacacttacttac 2464880  T
Q  364 acctttctaaaatactaaaattttggtaatgactcacaagctttcag 410  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  2464879 acctttctaaaatactaaaattttggtaatgactcgcaagctttcag 2464833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 265 - 409
Target Start/End: Original strand, 6736143 - 6736283
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 364  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     |||||||    
T  6736143 tgtcacgacccaatttcaagtcatgaccggcgcacaggctaacactaactcatgatatatttagcctagcaagcctaataaactataa----cacttaca 6736238  T
Q  365 cctttctaaaatactaaaattttggtaatgactcacaagctttca 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6736239 cctttctaaaatactaaaattttggtaatgactcacaagctttca 6736283  T

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Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 265 - 409
Target Start/End: Complemental strand, 2744442 - 2744302
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  2744442 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataa----cacttaca 2744347  T
Q  365 cctttctaaaatactaaaattttggtaatgactcacaagctttca 409  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  2744346 cctttctaaaatactaaaattttggtaatgactcataagctttca 2744302  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 265 - 401
Target Start/End: Complemental strand, 45682496 - 45682364
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 364  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||     | ||| |    
T  45682496 tgtcacgacccaatctcaggtcatgaccggcgtacaggctaacactaactcatgataaatttaacctggcaagcctagtaaactacaa----caattaga 45682401  T
Q  365 cctttctaaaatactaaaattttggtaatgactcaca 401  Q
    |||||||||||||||||||||||||||| ||||||||    
T  45682400 cctttctaaaatactaaaattttggtaacgactcaca 45682364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 265 - 398
Target Start/End: Complemental strand, 11952125 - 11951996
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 364  Q
    |||||||||||||||||||| ||||| | ||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||  ||||    
T  11952125 tgtcacgacccaatttcaggccatgatccgcgcataggctaatactaactcataatatatatagcctggcaagcctaataaactataacactta--taca 11952028  T
Q  365 cctttctaaaatactaaaattttggtaatgactc 398  Q
      |||  |||||| | ||||||||||||||||||    
T  11952027 --ttttcaaaatattgaaattttggtaatgactc 11951996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 286 - 409
Target Start/End: Complemental strand, 28173971 - 28173852
Alignment:
Q  286 catgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttacacctttctaaaatactaaaatt 385  Q
    ||||||| | |||||||||||||  ||||||||||| |||||||| |||||||||||||||||||||     |||||||||||| | ||||||  |||||    
T  28173971 catgaccagtgcacaggctaacaacaactcatgataaatttagcccggcaagcctaataaactataa----cacttacaccttttttaaataccgaaatt 28173876  T
Q  386 ttggtaatgactcacaagctttca 409  Q
    ||||||||||||||||| ||||||    
T  28173875 ttggtaatgactcacaaactttca 28173852  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 28173797 - 28173753
Alignment:
Q  358 acttacacctttctaaaatactaaaattttggtaatgactcacaa 402  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||    
T  28173797 acttaaacctttctaaaataccaaaattttggtaatgactcacaa 28173753  T

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Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 265 - 409
Target Start/End: Complemental strand, 29935558 - 29935418
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 364  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  29935558 tgtcacgacccaatttcaggtcatgaccggcgcataggctaacactaactcatgatatatttagcctggcaagcctaataaactataa----cacttaca 29935463  T
Q  365 cctttctaaaatactaaaattttggtaatgactcacaagctttca 409  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  29935462 cctttctaaaatactaaaattttggtaatgactcaaaagctttca 29935418  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 31291762 - 31291843
Alignment:
Q  264 gtgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataa 345  Q
    ||||||||||||||| ||| || |||||||||| | ||||||||||| |||| | ||||| ||| ||| |||||||||||||    
T  31291762 gtgtcacgacccaatctcaagttatgaccggcgtataggctaacactgactcgtcatataattaaccttgcaagcctaataa 31291843  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 29875211 - 29875168
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaaca 308  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||    
T  29875211 tgtcacgacccaatctcagatcatgaccggcgcacagactaaca 29875168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 265 - 402
Target Start/End: Complemental strand, 19491 - 19358
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 364  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     |||| ||    
T  19491 tgtcacgacccaatttcaggccatgaccggcgcacaggctaacactaactcatgatatatttagcctgacaagcctaataaactataa----cacttgca 19396  T
Q  365 cctttctaaaatactaaaattttggtaatgactcacaa 402  Q
    | ||||||||||||| ||||||||||||||||||||||    
T  19395 cgtttctaaaatactgaaattttggtaatgactcacaa 19358  T

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Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 265 - 402
Target Start/End: Original strand, 411079 - 411212
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 364  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     |||| ||    
T  411079 tgtcacgacccaatttcaggccatgaccggcgcacaggctaacactaactcatgatatatttagcctgacaagcctaataaactataa----cacttgca 411174  T
Q  365 cctttctaaaatactaaaattttggtaatgactcacaa 402  Q
    | ||||||||||||| ||||||||||||||||||||||    
T  411175 cgtttctaaaatactgaaattttggtaatgactcacaa 411212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 11109943 - 11109830
Alignment:
Q  284 gtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttacacctttctaaaatactaaaa 383  Q
    ||||||||||||| |||||||||||| ||||||||| | || ||| || |||||||||  |||||||||     ||||||||||||| |||||| | |||    
T  11109943 gtcatgaccggcgtacaggctaacacaaactcatgaaaaatatagtctagcaagcctaggaaactataa----cacttacacctttccaaaataatgaaa 11109848  T
Q  384 ttttggtaatgactcaca 401  Q
    |||| |||||||||||||    
T  11109847 tttttgtaatgactcaca 11109830  T

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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 286 - 402
Target Start/End: Original strand, 29896333 - 29896445
Alignment:
Q  286 catgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttacacctttctaaaatactaaaatt 385  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||  |||  || ||||||||||||||||| |||||    
T  29896333 catgaccggcgcacaggctaacactaactcatgataaatttagcctggcaagcctagtaaactataa--ctt--ttgcacctttctaaaatactgaaatt 29896428  T
Q  386 ttggtaatgactcacaa 402  Q
    |||||||||||||||||    
T  29896429 ttggtaatgactcacaa 29896445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 10540010 - 10539958
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcat 317  Q
    |||||||||||||||| ||| ||||||||||||| |||||||| |||||||||    
T  10540010 tgtcacgacccaattttaggccatgaccggcgcataggctaaccctaactcat 10539958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 13468672 - 13468623
Alignment:
Q  292 cggcgcacaggctaacactaactcatgatatatttagcctggcaagccta 341  Q
    |||||||||||||||||||||||| | ||||| |||||||||||| ||||    
T  13468672 cggcgcacaggctaacactaactcgtaatataattagcctggcaaaccta 13468623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 327
Target Start/End: Complemental strand, 10525689 - 10525627
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatattta 327  Q
    ||||||||  |||||| |||||||||||||||||  ||||||| ||||||||| ||| |||||    
T  10525689 tgtcacgattcaattttaggtcatgaccggcgcatcggctaaccctaactcatcatacattta 10525627  T

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Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 21542461 - 21542381
Alignment:
Q  265 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataa 345  Q
    |||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  21542461 tgtcacgacccaatctcagatcatgaccggcgcacaggctaacactgactcatcatataattagcctggcaagcctaataa 21542381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 42496864 - 42496796
Alignment:
Q  275 caatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaat 343  Q
    |||| ||| ||||||||||||||| | | ||||| ||| |||| |||||||| |||| |||||||||||    
T  42496864 caatctcaagtcatgaccggcgcatatgttaacattaattcatcatatatttggcctagcaagcctaat 42496796  T

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Target: scaffold0608 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 5380 - 5267
Alignment:
Q  284 gtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttacacctttctaaaatactaaaa 383  Q
    ||||||||||||| |||||||||||| ||||||||| | || ||| || |||||||||  |||||||||     ||||||||||||| |||||| | |||    
T  5380 gtcatgaccggcgtacaggctaacacaaactcatgaaaaatatagtctagcaagcctaggaaactataa----cacttacacctttccaaaataatgaaa 5285  T
Q  384 ttttggtaatgactcaca 401  Q
    |||| |||||||||||||    
T  5284 tttttgtaatgactcaca 5267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 15688682 - 15688623
Alignment:
Q  286 catgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataa 345  Q
    ||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||    
T  15688682 catgaccggcgcacaggctaatactaactcacgataaatatagcctggcaagcctaataa 15688623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 15696275 - 15696216
Alignment:
Q  286 catgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataa 345  Q
    ||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||    
T  15696275 catgaccggcgcacaggctaatactaactcacgataaatatagcctggcaagcctaataa 15696216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 15703255 - 15703196
Alignment:
Q  286 catgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataa 345  Q
    ||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||    
T  15703255 catgaccggcgcacaggctaatactaactcacgataaatatagcctggcaagcctaataa 15703196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 8554772 - 8554832
Alignment:
Q  282 aggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaa 342  Q
    ||||||||||||||||||| | ||||||| |||||  ||||  ||||||||||||||||||    
T  8554772 aggtcatgaccggcgcacaagataacactcactcaacatatgattagcctggcaagcctaa 8554832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 24026049 - 24026101
Alignment:
Q  300 aggctaacactaactcatgatatatttagcctggcaagcctaataaactataa 352  Q
    ||||||||||| |||||| |||||||||||  | ||| |||||||||||||||    
T  24026049 aggctaacactgactcatcatatatttagctggacaatcctaataaactataa 24026101  T

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