View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4585_low_3 (Length: 323)
Name: NF4585_low_3
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4585_low_3 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| |
|
| [»] chr1 (11 HSPs) |
| |
|
Alignment Details
Target: scaffold0341 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 808 - 1130
Alignment:
| Q |
1 |
ttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
808 |
ttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttct |
907 |
T |
|
| Q |
101 |
gcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
908 |
gcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaat |
1007 |
T |
|
| Q |
201 |
tgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtcca |
300 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
1008 |
tgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtcca |
1107 |
T |
|
| Q |
301 |
atcgcgtttactttgtctgtgtt |
323 |
Q |
| |
|
|| |||||||||||||| ||||| |
|
|
| T |
1108 |
atagcgtttactttgtcggtgtt |
1130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 8461 - 8784
Alignment:
| Q |
1 |
ttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8461 |
ttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttct |
8560 |
T |
|
| Q |
101 |
gcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8561 |
gcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaat |
8660 |
T |
|
| Q |
201 |
tgcttcttttcg-gttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtcc |
299 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
8661 |
tgcttcttttcgtattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtcc |
8760 |
T |
|
| Q |
300 |
aatcgcgtttactttgtctgtgtt |
323 |
Q |
| |
|
||| |||||||||||||| ||||| |
|
|
| T |
8761 |
aatagcgtttactttgtcggtgtt |
8784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 6506783 - 6507105
Alignment:
| Q |
1 |
ttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506783 |
ttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttct |
6506882 |
T |
|
| Q |
101 |
gcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506883 |
gcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaat |
6506982 |
T |
|
| Q |
201 |
tgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtcca |
300 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
6506983 |
tgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtcca |
6507082 |
T |
|
| Q |
301 |
atcgcgtttactttgtctgtgtt |
323 |
Q |
| |
|
|| |||||||||||||| ||||| |
|
|
| T |
6507083 |
atagcgtttactttgtcggtgtt |
6507105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 121 - 323
Target Start/End: Complemental strand, 6521832 - 6521630
Alignment:
| Q |
121 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcggttttgac |
220 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6521832 |
gcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac |
6521733 |
T |
|
| Q |
221 |
aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtctgt |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6521732 |
aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagt |
6521633 |
T |
|
| Q |
321 |
gtt |
323 |
Q |
| |
|
||| |
|
|
| T |
6521632 |
gtt |
6521630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 6517089 - 6517399
Alignment:
| Q |
1 |
ttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttct |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| || ||||||||||||||||||| ||| | || ||| |
|
|
| T |
6517089 |
ttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttca------tttatcgccgtct |
6517182 |
T |
|
| Q |
101 |
gcaaattccatgcaatcatggca-ggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaa |
199 |
Q |
| |
|
|||| ||||||| |||| | |||| | |||| || |||||||||||||||| |||| |||||||||||||| | ||||| |||||||| |||| |
|
|
| T |
6517183 |
tcaaactccatgct-tcataataaggtctagtgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaa |
6517281 |
T |
|
| Q |
200 |
ttgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtcc |
299 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||||||| ||||||||||||| ||| |||||| |||||||||| |||| | ||||||||| |||||||| |
|
|
| T |
6517282 |
ttgcttgttttctattttgacaacgttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtcc |
6517381 |
T |
|
| Q |
300 |
aatcgcgtttactttgtc |
317 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
6517382 |
aattgcgtttactttgtc |
6517399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 131 - 323
Target Start/End: Original strand, 6512814 - 6513006
Alignment:
| Q |
131 |
tttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcggttttgacaatgttgtgt |
230 |
Q |
| |
|
||||||| | ||| ||||||||||||| |||| |||||||||||||| | || || || ||||| ||||| || |||||||| ||||||||| ||||||| |
|
|
| T |
6512814 |
tttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgt |
6512913 |
T |
|
| Q |
231 |
tagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtctgtgtt |
323 |
Q |
| |
|
||||| |||| |||||| || | ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
6512914 |
tagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtt |
6513006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 47778150 - 47778041
Alignment:
| Q |
121 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcggttttgac |
220 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||||||||| ||| |||| ||| |
|
|
| T |
47778150 |
gcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggac |
47778051 |
T |
|
| Q |
221 |
aatgttgtgt |
230 |
Q |
| |
|
|| ||||||| |
|
|
| T |
47778050 |
aaagttgtgt |
47778041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 323
Target Start/End: Original strand, 47760133 - 47760305
Alignment:
| Q |
145 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttg |
244 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||| || |||| |||| ||||||||||||||| ||||| ||||| ||| ||| |||||||| ||| |
|
|
| T |
47760133 |
aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg |
47760226 |
T |
|
| Q |
245 |
aatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtctgtgtt |
323 |
Q |
| |
|
||| ||||| ||| | | ||| | | | |||| |||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
47760227 |
aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgtt |
47760305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 6523810 - 6523733
Alignment:
| Q |
145 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcggttttgacaa |
222 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||| || ||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
6523810 |
aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaa |
6523733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6512690 - 6512769
Alignment:
| Q |
1 |
ttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttc |
80 |
Q |
| |
|
||||||||||| || || |||| |||| ||||| ||||||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
6512690 |
ttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttc |
6512769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 47782034 - 47781969
Alignment:
| Q |
145 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
210 |
Q |
| |
|
||||| ||||||| ||| |||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47782034 |
aatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt |
47781969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 47788272 - 47788183
Alignment:
| Q |
121 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
210 |
Q |
| |
|
|||||||| ||||| || | ||| | ||||||||||| ||| |||| ||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47788272 |
gcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
47788183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 323
Target Start/End: Original strand, 47713257 - 47713390
Alignment:
| Q |
190 |
taccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctc |
289 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||| ||| ||| |||||||| |||||| ||||| | | | | ||| ||| |||| |||||||||| |
|
|
| T |
47713257 |
taccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctc |
47713356 |
T |
|
| Q |
290 |
tacatagtccaatcgcgtttactttgtctgtgtt |
323 |
Q |
| |
|
| || |||||||| |||||||||||||| ||||| |
|
|
| T |
47713357 |
tgcagagtccaatggcgtttactttgtcggtgtt |
47713390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 169 - 314
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
| Q |
169 |
aacatgcatttttcatcgtcgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaat |
268 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||| |||| ||||| ||||||||| |
|
|
| T |
722305 |
aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaat |
722207 |
T |
|
| Q |
269 |
cattgagtttgacatctcctctacatagtccaatcgcgtttacttt |
314 |
Q |
| |
|
||||||| || |||||||||||||||||||||| | |||||||||| |
|
|
| T |
722206 |
cattgagcttaacatctcctctacatagtccaaccacgtttacttt |
722161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 28856512 - 28856632
Alignment:
| Q |
196 |
ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata |
295 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||||||||| ||||||| || || ||| | | |||||||| | || ||||||||||| |||| |
|
|
| T |
28856512 |
ccaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata |
28856611 |
T |
|
| Q |
296 |
gtccaatcgcgtttactttgt |
316 |
Q |
| |
|
||| || |||| |||||||| |
|
|
| T |
28856612 |
atcctatggcgtatactttgt |
28856632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 28831318 - 28831368
Alignment:
| Q |
198 |
aattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatt |
248 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
28831318 |
aattgcttctttttggtttggacaattttgtgttagaagaactcttgaatt |
28831368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 28861789 - 28861909
Alignment:
| Q |
196 |
ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata |
295 |
Q |
| |
|
||||||||||||||| |||| |||| | ||||||||||||||| ||||||| || || ||| | | |||||||| | || ||||||||||| |||| |
|
|
| T |
28861789 |
ccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata |
28861888 |
T |
|
| Q |
296 |
gtccaatcgcgtttactttgt |
316 |
Q |
| |
|
||| || |||| |||||||| |
|
|
| T |
28861889 |
atcctatggcgtatactttgt |
28861909 |
T |
|
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