View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4585_low_4 (Length: 321)
Name: NF4585_low_4
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4585_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 15309116 - 15309425
Alignment:
| Q |
1 |
taaccatttatatgatacgtgcttatgctataagcgctcgattaatttgtttcttcaaacaggactttaagtttgattcgttcaaccttatttttatttg |
100 |
Q |
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| T |
15309116 |
taaccatttatatgatacgtgcttatgctataagcgctcgattaatttgtttcttcaaacaggactttaagtttgatttgttcaaccttatttttatttg |
15309215 |
T |
|
| Q |
101 |
attatttttcttcaatacaggttctgcaggacttagtttccttcagttttgcaatttgaacagctttagaaccaaattcattattggattctctattttc |
200 |
Q |
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| T |
15309216 |
attatatttcttcaatacaggttctgcaggacttagtttccttcagttttgcaatttgaacagctttagaaccaaattcattattggattctctattttc |
15309315 |
T |
|
| Q |
201 |
atgggattttctataccacaatacttcaaggaatgcacagcaattaaggaatatggtcctgtgcacactaatgctagatgggtatatcaaccttctctcg |
300 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15309316 |
atgggattttctgtaccacaatacttcaaggaatacacagcaattaagcaatatggtcctgtgcacactaatgctagatgggtatatcaaccttctctcg |
15309415 |
T |
|
| Q |
301 |
ttcatctcat |
310 |
Q |
| |
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||| |||||| |
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| T |
15309416 |
ttcttctcat |
15309425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 26472226 - 26472114
Alignment:
| Q |
117 |
acaggttctgcaggacttagtttccttcagttttgcaatttgaacagctttagaaccaaattcattattggattctctattttcatgggattttctatac |
216 |
Q |
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|||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||||| | || |||||||||||||||||||| ||||||| |
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| T |
26472226 |
acaggttctgcaggtcttagcttccttcaattttgcaatttaaacagctttagaacaaaattcatcttaggcttctctattttcatgggattctctatac |
26472127 |
T |
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| Q |
217 |
cacaatacttcaa |
229 |
Q |
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| T |
26472126 |
cacaatatttcaa |
26472114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 52542498 - 52542454
Alignment:
| Q |
8 |
ttatatgatacgtgcttatgctataagcgctcgattaatttgttt |
52 |
Q |
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|||||||||||||||||||||||| |||||| ||||| |||||| |
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| T |
52542498 |
ttatatgatacgtgcttatgctatcagcgcttaattaagttgttt |
52542454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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