View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4585_low_9 (Length: 251)
Name: NF4585_low_9
Description: NF4585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4585_low_9 |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 719 - 538
Alignment:
| Q |
1 |
ttgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatt |
100 |
Q |
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| T |
719 |
ttgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatt |
620 |
T |
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| Q |
101 |
tgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
185 |
Q |
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| T |
619 |
tgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 8372 - 8191
Alignment:
| Q |
1 |
ttgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8372 |
ttgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatt |
8273 |
T |
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| Q |
101 |
tgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
185 |
Q |
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| T |
8272 |
tgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
8191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 554 - 502
Alignment:
| Q |
196 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcc |
248 |
Q |
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| T |
554 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcc |
502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 8207 - 8155
Alignment:
| Q |
196 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcc |
248 |
Q |
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| T |
8207 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcc |
8155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 6506694 - 6506513
Alignment:
| Q |
1 |
ttgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6506694 |
ttgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatt |
6506595 |
T |
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| Q |
101 |
tgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
185 |
Q |
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| T |
6506594 |
tgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
6506513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 6512601 - 6512451
Alignment:
| Q |
1 |
ttgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatt |
100 |
Q |
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||||| ||||| ||||||| ||||||||||||| |||||||| |||||| |||| || ||||| | |||| || ||||||| |||||||||| |
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| T |
6512601 |
ttgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggt------gctagaattgttagaccaagttgttatt |
6512508 |
T |
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| Q |
101 |
tgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcat |
157 |
Q |
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| T |
6512507 |
tgagatatgaaaccgattcactcttctatcaacaaacaccagatccaccctcatcat |
6512451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 6516924 - 6516855
Alignment:
| Q |
83 |
ttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttc |
152 |
Q |
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| T |
6516924 |
ttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttc |
6516855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 6522038 - 6522161
Alignment:
| Q |
4 |
tgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttga |
103 |
Q |
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| T |
6522038 |
tgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaatag-----gt-taggtgctagaattgttagacccagttgtaatttga |
6522131 |
T |
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| Q |
104 |
gatatgaaaccaattcacttttctatcaac |
133 |
Q |
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||||||||||||||||| | |||||||||| |
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| T |
6522132 |
gatatgaaaccaattcattcttctatcaac |
6522161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 6506529 - 6506477
Alignment:
| Q |
196 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcc |
248 |
Q |
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| T |
6506529 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcc |
6506477 |
T |
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