View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586-Insertion-3 (Length: 576)
Name: NF4586-Insertion-3
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 84 - 483
Target Start/End: Original strand, 40944335 - 40944734
Alignment:
| Q |
84 |
caaaactcaaacttgtcatatttgcatgaacaaaaaacacattttaacatnnnnnnnnnnng--ttcaaatcaaaattagatcaatatatacatcagatc |
181 |
Q |
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| T |
40944335 |
caaaactcaaacttgtcatatttgcatggacaaaaaacacattttaacattaaaaaaaaaaaatttcaaatcaaaattagatcaatatatacatcagatt |
40944434 |
T |
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| Q |
182 |
gaagatgaggatgaagctatgaagttcaaattgaaggttggaagatcaaattcaagttttgcattacaaaattgaagatcaactcaaaactttatacggt |
281 |
Q |
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| T |
40944435 |
ggagatgaggatgaagctatgaagttcaaattgaaggttgaaagatcaaattcaagttttgcattacaaaattgaagatcaactcaaaactttacatggt |
40944534 |
T |
|
| Q |
282 |
gactttaacttgagaaattcataaaacaccaaagaaaggatgaaaggaatcaaactcaagtgaaaaatagaagattagattgagcatcataagattgaat |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||| |||| |
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| T |
40944535 |
gactttaacttgagaaattcataaaacaccaaagaaaggatgaaaggaaccaaactcaagtg-aaaata-aagattagattgagcatcataaga-cgaat |
40944631 |
T |
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| Q |
382 |
tcatatccaagcaatattttcgctattggaagaaacttagtcatcaaggcaaaattcaaatcaacaaatgac-aaaataacgactacttttgcattaact |
480 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
40944632 |
tcatatcgaagcaatattttcgctattggaagaaacttaatcatcaaggcaaaattcaaatcaacaaatgacaaaaaaaacgactacttttgcattaact |
40944731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 145 - 441
Target Start/End: Original strand, 40919740 - 40920034
Alignment:
| Q |
145 |
gttcaaatcaaaattagatcaatatatacatcagatcgaagatgaggatgaagctatgaagttcaaattgaaggttggaagatcaaattcaagttttgca |
244 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| | |||||||| |||||||||| |
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| T |
40919740 |
gttcaaatcaaaattagatcaatatatacatcagattgaagataaggatgaagctatgaagttcagattgaaggttgggaaatcaaattaaagttttgca |
40919839 |
T |
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| Q |
245 |
ttacaaaattgaagatcaactcaaaactttatacggtgactttaacttgagaaattcataaaacaccaaagaaaggatgaaaggaatcaaactcaagtga |
344 |
Q |
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||||||| ||||||| | | || |||| |||| |||||| ||| |||||||||||||||||| |||||| |||||||||||||| ||| || |||||| |
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| T |
40919840 |
ttacaaatttgaagaccgagtc--aactctata-ggtgacaataaattgagaaattcataaaactccaaaggaaggatgaaaggaaccaatcttaagtga |
40919936 |
T |
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| Q |
345 |
aaaatagaagattagattgagcatcataagattgaattcatat-ccaagcaatattttcgctattggaagaaacttagtcatcaaggcaaaattcaaa |
441 |
Q |
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| T |
40919937 |
gaaaatgaagattagattgggcatcataagatggaagttagatatgaagcaatattctcactactggaagaaacttagtcatcaaggcaaaattcaaa |
40920034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 506 - 576
Target Start/End: Original strand, 40944732 - 40944802
Alignment:
| Q |
506 |
agttggtcccaactatttcctatataaggaaacatcattcaaatgatctcacatttctcacaatatcatat |
576 |
Q |
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| T |
40944732 |
agttggtcccaactattgcctatataaggaaacatcattcaaatgatctcacatttctcacaacatcatat |
40944802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 500 - 576
Target Start/End: Original strand, 40920043 - 40920119
Alignment:
| Q |
500 |
aagacaagttggtcccaactatttcctatataaggaaacatcattcaaatgatctcacatttctcacaatatcatat |
576 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |
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| T |
40920043 |
aagacaagttgatcccaattatttcctatataaggaaacatcattcaaaagatcttacatttctcacaagatcatat |
40920119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 470
Target Start/End: Complemental strand, 1890540 - 1890473
Alignment:
| Q |
404 |
ctattggaagaaa-cttagtcatcaaggcaaaattcaaatcaacaaatgacaaaataacgactacttt |
470 |
Q |
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| T |
1890540 |
ctattagaagaaagcttagtcatcaatgcaaagttcaaattcacaaaagacaaaataacggctacttt |
1890473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 13074581 - 13074630
Alignment:
| Q |
80 |
ggaccaaaactcaaacttgtcatatttgcatgaacaaaaaacacatttta |
129 |
Q |
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| T |
13074581 |
ggaccaaaactcaaactcgtcatatttgcaggaaccaaaaatatatttta |
13074630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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