View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4586-Insertion-5 (Length: 99)

Name: NF4586-Insertion-5
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4586-Insertion-5
NF4586-Insertion-5
[»] chr4 (1 HSPs)
chr4 (7-98)||(26573146-26573237)
[»] chr2 (7 HSPs)
chr2 (16-64)||(10350334-10350382)
chr2 (46-98)||(10350473-10350525)
chr2 (46-96)||(10370211-10370261)
chr2 (8-49)||(10339322-10339363)
chr2 (54-98)||(10339536-10339580)
chr2 (10-49)||(10370010-10370049)
chr2 (8-47)||(10378248-10378287)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 26573146 - 26573237
Alignment:
Q  7 atttctttctcttcttcaagcttttgcatacacagttcaaaaggatctttttacgagaccaactaaatataactttgaagtttcaacacccg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26573146 atttctttctcttcttcaagcttttgcatacacagttcaaaaggatctttttacgagaccaactaaatataactttgaagtttcaacacccg 26573237  T

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Target: chr2 (Bit Score: 41; Significance: 0.000000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 10350334 - 10350382
Alignment:
Q  16 tcttcttcaagcttttgcatacacagttcaaaaggatctttttacgaga 64  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  10350334 tcttcttcaagtttttgcatacacagttcgaaaggatctttttacgaga 10350382  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 10350473 - 10350525
Alignment:
Q  46 aaaggatctttttacgagaccaactaaatataactttgaagtttcaacacccg 98  Q
    |||||||||||||| |||||||||||||| || || |||||||||||||||||    
T  10350473 aaaggatctttttatgagaccaactaaatttatctatgaagtttcaacacccg 10350525  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 10370211 - 10370261
Alignment:
Q  46 aaaggatctttttacgagaccaactaaatataactttgaagtttcaacacc 96  Q
    |||||||||||||| |||||||||||||| ||||||| || ||||||||||    
T  10370211 aaaggatctttttatgagaccaactaaatttaactttaaattttcaacacc 10370261  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 10339322 - 10339363
Alignment:
Q  8 tttctttctcttcttcaagcttttgcatacacagttcaaaag 49  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  10339322 tttcttcctcttcttcaagcttttgcatacactgttcaaaag 10339363  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 10339536 - 10339580
Alignment:
Q  54 tttttacgagaccaactaaatataactttgaagtttcaacacccg 98  Q
    |||||||||||| | |||||| ||||||| |||||||||||||||    
T  10339536 tttttacgagactacctaaatttaactttaaagtttcaacacccg 10339580  T

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Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 10370010 - 10370049
Alignment:
Q  10 tctttctcttcttcaagcttttgcatacacagttcaaaag 49  Q
    |||| ||||||||||| ||||||||||||| |||||||||    
T  10370010 tcttcctcttcttcaaacttttgcatacactgttcaaaag 10370049  T

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Target: chr2; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 10378248 - 10378287
Alignment:
Q  8 tttctttctcttcttcaagcttttgcatacacagttcaaa 47  Q
    |||||| |||| |||||||||||||||||||| |||||||    
T  10378248 tttcttcctctgcttcaagcttttgcatacactgttcaaa 10378287  T

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