View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_high_23 (Length: 337)
Name: NF4586_high_23
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_high_23 |
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| [»] scaffold0343 (1 HSPs) |
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Alignment Details
Target: scaffold0343 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0343
Description:
Target: scaffold0343; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 5636 - 5317
Alignment:
| Q |
1 |
ggtaaaatttatttcatttcaaataggcacttaatgctacattttacacttttcacatgaacacggaaaactgatacattaaatacacaaacaactaatt |
100 |
Q |
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| T |
5636 |
ggtaaaatttatttcatttcaaataggcacttaatgctacattttacacttttcacatgaacacagaaaacacatacattaaatacactaacaactaatt |
5537 |
T |
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| Q |
101 |
tccttacgtaaggggaggacttccttcgcacttttgattttatacaattacattattctttttctgatcttgatccgccgattctcaggagaaatgggca |
200 |
Q |
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| T |
5536 |
tccttacgtaaggggaggacttccttcgcacctttgattttagacaattacattattctttttctagtcttaatcctccgattctcgggagaaatgggca |
5437 |
T |
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| Q |
201 |
ttggtaatgcgaagttcagccaagaggtaaataatgttggtca--atatgatgagaacaacgataagctagagggtgggtgaatgtacaagccaaagtaa |
298 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
5436 |
ttggtaatgcgaagttcagccaggaggtaaataatgttggacattatatgatgagaacaacgataagctagagcgtgggtgaatttacaagccaaagtaa |
5337 |
T |
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| Q |
299 |
atgaattcatatttgatggt |
318 |
Q |
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|||||||| ||||||||||| |
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| T |
5336 |
atgaattcctatttgatggt |
5317 |
T |
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