View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_high_27 (Length: 312)
Name: NF4586_high_27
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 7500065 - 7499917
Alignment:
| Q |
25 |
aatgcaattcaaaatggggagaggattgtacttgattcaaaaggtttgtaccaatttttaaatattttgtttaaatcgactaggtcttcatctttagaac |
124 |
Q |
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| T |
7500065 |
aatgcaattcaaaatggagagaggattatatttgattgaaaaggtttataccaatttttaaatatttcatttaaatctactaggttttcatggttagaac |
7499966 |
T |
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| Q |
125 |
aattggggtaattggattggatgtgttttactctttcactctagtctac |
173 |
Q |
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| T |
7499965 |
aattgtggtaattggattggatgtgttttacttcttcactctagtctac |
7499917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7509180 - 7509132
Alignment:
| Q |
1 |
aagcaaggtgccaccattctccttaatgcaattcaaaatggggagagga |
49 |
Q |
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| T |
7509180 |
aagcaaggtgccaccattctccttaatgcaattcaaaatggggagagga |
7509132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 7499580 - 7499539
Alignment:
| Q |
184 |
atagatatgttgttttagaaataattaattcattaagaaatt |
225 |
Q |
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| T |
7499580 |
atagatatgttgttttagaactaattaattcactaagaaatt |
7499539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 7499451 - 7499390
Alignment:
| Q |
235 |
ttagggaagaaggtagtatgagattagataacaagtaaagtggtaaacaataatacattatc |
296 |
Q |
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| T |
7499451 |
ttagggacgaaggtaatatgagattagatagcaagttatgtggaatgcaataatacattatc |
7499390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 27241505 - 27241542
Alignment:
| Q |
12 |
caccattctccttaatgcaattcaaaatggggagagga |
49 |
Q |
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| T |
27241505 |
caccattcttcttaatgcaattcaaaatggtgagagga |
27241542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 27249111 - 27249148
Alignment:
| Q |
12 |
caccattctccttaatgcaattcaaaatggggagagga |
49 |
Q |
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| T |
27249111 |
caccattcttcttaatgcaattcaaaatggcgagagga |
27249148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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