View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_high_28 (Length: 299)
Name: NF4586_high_28
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 36971102 - 36970828
Alignment:
| Q |
15 |
atgaacgatgaaggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagcaaac |
114 |
Q |
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| T |
36971102 |
atgaacgatgagggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagcaaac |
36971003 |
T |
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| Q |
115 |
agttgatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggatga |
214 |
Q |
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| T |
36971002 |
agttgatgcaagaatgtgcgacagaattcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggacga |
36970903 |
T |
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| Q |
215 |
tatctgttgggctctgtgttcgttagggtttgacaactatgctgaagctattggaaggtacttgtataacttcag |
289 |
Q |
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| T |
36970902 |
tatctgttgggctctgtgttcgttagggtttgacaactatgctgaagctattggaaggtacttgtataaattcag |
36970828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 39786381 - 39786313
Alignment:
| Q |
159 |
ggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggatgatatctgttgggct |
227 |
Q |
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| T |
39786381 |
ggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatggtgatgatgtttgttgggct |
39786313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 56067978 - 56068049
Alignment:
| Q |
119 |
gatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaa |
190 |
Q |
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| T |
56067978 |
gatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaa |
56068049 |
T |
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