View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4586_high_32 (Length: 284)
Name: NF4586_high_32
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_high_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 35029850 - 35029581
Alignment:
| Q |
1 |
tgggtgctgagaatgcctcgggggatgttattaattagggtgcatatcatgtttaattattaactaataaactagtaaattaattaattaa----cataa |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35029850 |
tgggtgctgagaatgcctcgggggatgttattaattagggtgcatatcatgtttaattattaactaataaactagtaaattaattaattaattaacataa |
35029751 |
T |
|
| Q |
97 |
actttgtcctattccaaaatctaagctagctggctagcaaacttttaaatttgggttgtgaaaagttgtatacttttcataccattcattttgaagacaa |
196 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35029750 |
actttgtcctattcaaaaatctaagctagctggctagcaaacttttaaatttgggttgtgaaaagttgtatacttttcataccattcattttgaagacaa |
35029651 |
T |
|
| Q |
197 |
nnnnnnnnnggttgttttcttatggccgtgggtatggaatgccttgaagagttggagtgttacttaagtg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35029650 |
atattttttggttgttttcttatggccgtgggtatggaatgccttgaagagttggagtgttacttaagtg |
35029581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University