View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4586_high_4 (Length: 611)

Name: NF4586_high_4
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4586_high_4
NF4586_high_4
[»] chr4 (10 HSPs)
chr4 (11-592)||(42769493-42770052)
chr4 (190-418)||(42743797-42744031)
chr4 (190-418)||(42753156-42753390)
chr4 (194-418)||(42762778-42763002)
chr4 (267-418)||(42717169-42717320)
chr4 (190-418)||(42734482-42734716)
chr4 (458-579)||(42717023-42717147)
chr4 (446-579)||(42734726-42734862)
chr4 (439-520)||(42762694-42762775)
chr4 (188-225)||(42717371-42717408)
[»] chr5 (2 HSPs)
chr5 (252-411)||(23040511-23040670)
chr5 (190-235)||(23040443-23040488)


Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 11 - 592
Target Start/End: Complemental strand, 42770052 - 42769493
Alignment:
Q  11 tagataatactgataaatttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagtaacacaatgttatgc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  42770052 tagataatactgataaatttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagt--------------- 42769968  T
Q  111 ttctgatacatatatagtttacacataatacctaatttttcactctaactccattattatattatttgttcatgatatataggaagctaattggagcaag 210  Q
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42769967 -------acatatatagtttacacataatacctaatttttcactctaactccatttttatattatttgttcatgatatataggaagctaattggagcaag 42769875  T
Q  211 atatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769874 atatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatca 42769775  T
Q  311 accgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataagg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769774 accgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataagg 42769675  T
Q  411 tatgttggccaccgcttgctgtaggcggtggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggc 510  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769674 tatgttggccaccgcttgctgtgggcggtggatgctatgaagcagacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggc 42769575  T
Q  511 gtctgtgggtggtgatcccgtagaattttatgaaagcagtattgctatagggtctttccatgcagttgctaatggcattgtt 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769574 gtctgtgggtggtgatcccgtagaattttatgaaagcagtattgctatagggtctttccatgcagttgctaatggcattgtt 42769493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 190 - 418
Target Start/End: Complemental strand, 42744031 - 42743797
Alignment:
Q  190 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 283  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||       | ||  || |  | |||||| ||||||| |||||||||| ||||||    
T  42744031 taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt 42743932  T
Q  284 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 383  Q
    || |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  42743931 gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac 42743832  T
Q  384 ctaacgcacgagttgcggcctataaggtatgttgg 418  Q
    | || ||||||||||| ||||||||||| ||||||    
T  42743831 caaaagcacgagttgcagcctataaggtttgttgg 42743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 190 - 418
Target Start/End: Complemental strand, 42753390 - 42753156
Alignment:
Q  190 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 283  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||       | ||  || |  | |||||| ||||||| |||||||||| ||||||    
T  42753390 taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt 42753291  T
Q  284 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 383  Q
    || |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  42753290 gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac 42753191  T
Q  384 ctaacgcacgagttgcggcctataaggtatgttgg 418  Q
    | || ||||||||||| ||||||||||| ||||||    
T  42753190 caaaagcacgagttgcagcctataaggtttgttgg 42753156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 194 - 418
Target Start/End: Complemental strand, 42763002 - 42762778
Alignment:
Q  194 aagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatg 293  Q
    ||||| |||||||||||||||||||  ||||||| | ||||| || ||  || | ||| ||||||| |  | ||||||||||| ||   ||| |||||||    
T  42763002 aagcttattggagcaagatatttttttaaaggctttctggcaaatccttatagagccaaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatg 42762903  T
Q  294 gttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacg 393  Q
    ||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||| || |||||    
T  42762902 gttcacacactttatcaactgctggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacg 42762803  T
Q  394 agttgcggcctataaggtatgttgg 418  Q
    |||||| ||||||||||| ||||||    
T  42762802 agttgcagcctataaggtttgttgg 42762778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 267 - 418
Target Start/End: Complemental strand, 42717320 - 42717169
Alignment:
Q  267 atagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaac 366  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||   |||||    
T  42717320 atagtgcacgtgacattgatggtcatggtacacatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaatggaac 42717221  T
Q  367 agcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttgg 418  Q
    ||||||||||||||| || || ||||||||||  ||||||||||| ||||||    
T  42717220 agcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttgg 42717169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 190 - 418
Target Start/End: Original strand, 42734482 - 42734716
Alignment:
Q  190 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 283  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||||       | ||  || |  | |||||| ||||||| ||||||| || |||  |    
T  42734482 taggaagcttattggcgcaagatatttttacaaaggctatatggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcccgtgacagt 42734581  T
Q  284 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 383  Q
    |  |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||    |||||||||||||||||||| |    
T  42734582 gtaggtcatggttcacatactttatcaactgctggaggaaattttgttgctaatgcaagtgtatttggctatggaaatggaacagcaagtggtggatcgc 42734681  T
Q  384 ctaacgcacgagttgcggcctataaggtatgttgg 418  Q
    | || ||||||||| | ||||||||||| ||||||    
T  42734682 caaaagcacgagtttccgcctataaggtttgttgg 42734716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 458 - 579
Target Start/End: Complemental strand, 42717147 - 42717023
Alignment:
Q  458 attttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtgat---cccgtagaattttatgaaagcagtattg 554  Q
    |||||||||||||| ||||||||||||  ||| ||||| || ||| |||| | |||| |||||||||||   || || |||||||| || |||||||||     
T  42717147 attttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtattt 42717048  T
Q  555 ctatagggtctttccatgcagttgc 579  Q
    | |||||||||||||||||||||||    
T  42717047 ccatagggtctttccatgcagttgc 42717023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 446 - 579
Target Start/End: Original strand, 42734726 - 42734862
Alignment:
Q  446 tatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtga---tcccgtagaattttatg 542  Q
    ||||| || || |||||||||||||| ||||||||||||  ||| |||||||||||| |||| | |||| || |||||||   ||| || |||||| | |    
T  42734726 tatgatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagtgtctttgagtggtgattttcctgttgaatttcacg 42734825  T
Q  543 aaagcagtattgctatagggtctttccatgcagttgc 579  Q
    | ||||||||| | |||||||||||||||||||||||    
T  42734826 atagcagtatttccatagggtctttccatgcagttgc 42734862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 520
Target Start/End: Complemental strand, 42762775 - 42762694
Alignment:
Q  439 tggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggt 520  Q
    |||||| ||||| || ||||||||||||||||| ||||||||||||  ||| |||||||||||| |||||| |||| |||||    
T  42762775 tggatgttatgatgcagacattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtctttgggt 42762694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 42717408 - 42717371
Alignment:
Q  188 tataggaagctaattggagcaagatatttttacaaagg 225  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42717408 tataggaagcttattggagcaagatatttttacaaagg 42717371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 252 - 411
Target Start/End: Original strand, 23040511 - 23040670
Alignment:
Q  252 caaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttgg 351  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||| ||||| |||||||||||    
T  23040511 caaatgaaacattcaatagtgcacgtgactttgatggtcatggttcacatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtatttgg 23040610  T
Q  352 caatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggt 411  Q
    |||||||| |||||||||||||||||||||||| || || |||||||| |||||||||||    
T  23040611 caatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggt 23040670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 23040443 - 23040488
Alignment:
Q  190 taggaagctaattggagcaagatatttttacaaaggctatttggca 235  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||    
T  23040443 taggaagcttattggagcaagatattttaacaaaggctatctggca 23040488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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