View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_high_47 (Length: 249)
Name: NF4586_high_47
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_high_47 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 50088908 - 50088681
Alignment:
| Q |
22 |
caaacacgggtatctccaatttggttttcaaaccaaaccacattgctaaagatgttaagtgagagaaccatattaataacaatgaggtataataatacaa |
121 |
Q |
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| T |
50088908 |
caaacacgggtatctccaatttggttttcaaaccaaaccacattgctaaagatgttaagtgagagaaccatattaataacaatgaggtataataatacaa |
50088809 |
T |
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| Q |
122 |
acaagagaaattatataaagattttacaggtgtataaggaggttagggtttagttagatgtcgaagtggggagttatgaaaattaataccaatgttaagt |
221 |
Q |
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| T |
50088808 |
acaagagaaattatataaagattttacaggtgtataaggaggttagggtttagttagatgtcgaagtggggagttatgaaaattaataccaatgttaagt |
50088709 |
T |
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| Q |
222 |
gagcgttgagtgacgtgaagtcctacat |
249 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
50088708 |
gagcgttgagtgacgtgaagtcctacat |
50088681 |
T |
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