View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4586_high_59 (Length: 227)
Name: NF4586_high_59
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_high_59 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10865794 - 10865568
Alignment:
| Q |
1 |
tcatcactagaagcctttatttgactaaacaataatactaattaaactatatattttttctgctgttcatagaaactaattagtagttttatagtatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10865794 |
tcatcactagaagcctttatttgactaaacaataatactaattaaactatatattttttctgctgttcatagaaactaattagtagttttatagtatatg |
10865695 |
T |
|
| Q |
101 |
aagtgtgctgaataaaaacatgtttgattgtttttgactcaatgtgtttatagtatatcacttgttagaatattagaaaacatattttatagtacaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10865694 |
aagtgtgctgaataaaaacatgtttgattgtttttgactcaacgtgtttatagtatatcacttgttagaatattagaaaacatattttatagtacaactt |
10865595 |
T |
|
| Q |
201 |
gtatatcatacaatatgtcttacgctt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
10865594 |
gtatatcatacaatatgtcttacgctt |
10865568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University