View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4586_low_12 (Length: 439)

Name: NF4586_low_12
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4586_low_12
NF4586_low_12
[»] chr4 (10 HSPs)
chr4 (195-429)||(52206994-52207228)
chr4 (77-178)||(52206406-52206507)
chr4 (71-153)||(52207226-52207308)
chr4 (72-230)||(53522833-53522991)
chr4 (71-164)||(44348836-44348929)
chr4 (151-230)||(30938751-30938829)
chr4 (71-221)||(56459669-56459818)
chr4 (18-52)||(52207343-52207377)
chr4 (108-162)||(30765437-30765491)
chr4 (127-163)||(10523697-10523733)
[»] chr5 (3 HSPs)
chr5 (77-230)||(2707421-2707572)
chr5 (71-221)||(34064796-34064945)
chr5 (77-163)||(14395342-14395428)
[»] chr8 (4 HSPs)
chr8 (77-239)||(5664178-5664337)
chr8 (144-200)||(31042780-31042836)
chr8 (77-227)||(29703399-29703548)
chr8 (71-122)||(31042729-31042780)
[»] chr3 (2 HSPs)
chr3 (135-230)||(29535556-29535650)
chr3 (103-163)||(54515789-54515849)
[»] chr2 (4 HSPs)
chr2 (141-236)||(37569912-37570005)
chr2 (71-172)||(3130166-3130267)
chr2 (103-154)||(44040024-44040075)
chr2 (137-178)||(20940161-20940202)
[»] chr1 (3 HSPs)
chr1 (71-221)||(19402325-19402474)
chr1 (72-163)||(48578408-48578499)
chr1 (136-201)||(18543602-18543667)
[»] chr7 (1 HSPs)
chr7 (77-163)||(3233378-3233464)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 195 - 429
Target Start/End: Complemental strand, 52207228 - 52206994
Alignment:
Q  195 ttctcatcaacatattcatttgttcatcttccccaaacaacaacgctttctgatccttnnnnnnnntgttttatcatgagtgcatgactccaccaccatt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||||||||    
T  52207228 ttctcatcaacatattcatttgttcatcttccccaaacaacaacgctttctgatccttaaaaaaaatgttttatcatgagtccatgactccaccaccatt 52207129  T
Q  295 tgtgttgagatcactcttcccagatctgtattttaaagaattactttaataaggtgttcttcaagtaaacaatcgagttttctttttcacctcgtcttca 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52207128 tgtgttgagatcactcttcccagatctgtattttaaagaattactttaataaggtgttcttcaagtaaacaatcgagttttctttctcacctcgtcttca 52207029  T
Q  395 acacccaccttcgtctcccttcaaacacttctctg 429  Q
    ||||||||||||| |||||||||||||||||||||    
T  52207028 acacccaccttcgcctcccttcaaacacttctctg 52206994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 52206406 - 52206507
Alignment:
Q  77 atatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaagactcacatgtgt 176  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52206406 atatctagtgagaatggcttagttatatgagaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaagactcacatgtgt 52206505  T
Q  177 ct 178  Q
    ||    
T  52206506 ct 52206507  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 52207308 - 52207226
Alignment:
Q  71 gaggatatatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttc 153  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52207308 gaggacatatctagtgagaatggcttagttacatgacaatggttagaatacttctcaacccttggatcaaaaataaatggttc 52207226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 53522833 - 53522991
Alignment:
Q  72 aggatatatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttg-gatcaaaaataaatggttcagattaaaaagactcac 170  Q
    |||| ||||||||||||||||| ||| ||| |||| ||||||||||| |||| |||||| ||  | ||| ||||||||||||||||||| || | |||||    
T  53522833 aggacatatctagtgagaatgggttaattatatgagaatggtgagaacacttatcaaccttttaggtcagaaataaatggttcagattagaatg-ctcac 53522931  T
Q  171 atgtgtcttaacatattctatcaattctcatcaacatattcatttgttcatcttccccaa 230  Q
    |||||||||||  |||| |||||||||||| ||||  ||| |||||||||||||||||||    
T  53522932 atgtgtcttaatctattgtatcaattctcaacaactcattaatttgttcatcttccccaa 53522991  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 44348929 - 44348836
Alignment:
Q  71 gaggatatatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaag 164  Q
    ||||| ||||||||||||||||| | ||||| |||| |||||||| ||||||||||||||||| ||||||||||  |||||| |||||||||||    
T  44348929 gaggacatatctagtgagaatgggtaagttatatgagaatggtgaaaatacttctcaacccttagatcaaaaattgatggttgagattaaaaag 44348836  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 30938829 - 30938751
Alignment:
Q  151 ttcagattaaaaagactcacatgtgtcttaacatattctatcaattctcatcaacatattcatttgttcatcttccccaa 230  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||    
T  30938829 ttcagattaaaagg-ctcacatgtgtcttaacctattctatcaattctcatcaattcattcatttgttcatcttccccaa 30938751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 56459818 - 56459669
Alignment:
Q  71 gaggatatatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaagactcac 170  Q
    |||||| | |||| |||||||| |||| ||| |||| ||||||||||| |||| |||||| || ||| ||||||||||||| ||||||| ||| ||| ||    
T  56459818 gaggatgtttctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagattacaaaaacttac 56459719  T
Q  171 atgtgtcttaacatattctatcaattctcatcaacatattcatttgttcat 221  Q
    ||||||| | || |||||||||| ||||||||||   |||| |||||||||    
T  56459718 atgtgtc-tcacctattctatcatttctcatcaattcattcctttgttcat 56459669  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 52207377 - 52207343
Alignment:
Q  18 agtattacaccacgagcagattacacattattagt 52  Q
    |||||||||||||||||||||||||||||||||||    
T  52207377 agtattacaccacgagcagattacacattattagt 52207343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 30765491 - 30765437
Alignment:
Q  108 aatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaa 162  Q
    |||||||||||||||| |||||| || ||||||||| || |||| ||||||||||    
T  30765491 aatggtgagaatacttatcaacctttagatcaaaaacaagtggtccagattaaaa 30765437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 10523733 - 10523697
Alignment:
Q  127 aacccttggatcaaaaataaatggttcagattaaaaa 163  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  10523733 aaccattggatcaaaaataaatggttgagattaaaaa 10523697  T

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Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 2707421 - 2707572
Alignment:
Q  77 atatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaagactcacatgtgt 176  Q
    ||||||||||||||||| ||| ||| |||| |||||||||||  ||| |||||| || ||| ||||||||||||| |||||||||| | |||||||||||    
T  2707421 atatctagtgagaatgggttaattatatgagaatggtgagaac-cttatcaacctttagataaaaaataaatggtccagattaaaagg-ctcacatgtgt 2707518  T
Q  177 cttaacatattctatcaattctcatcaacatattcatttgttcatcttccccaa 230  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  2707519 cttaacctattctatcaattctcatcaacatatccatttgttcatcttccccaa 2707572  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 34064945 - 34064796
Alignment:
Q  71 gaggatatatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaagactcac 170  Q
    |||||| |||||| |||||||| |||| ||| |||| ||||||||||| |||| |||||| || ||| |||||||||||||  |||||||||| ||| ||    
T  34064945 gaggatgtatctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaaaaaaacttac 34064846  T
Q  171 atgtgtcttaacatattctatcaattctcatcaacatattcatttgttcat 221  Q
    ||||||| | || |||||||||| ||||||||||   |||| |||||||||    
T  34064845 atgtgtc-tcacctattctatcatttctcatcaattcattcctttgttcat 34064796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 14395428 - 14395342
Alignment:
Q  77 atatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaa 163  Q
    ||||||| ||||||||  ||| |||  ||| ||||||||||| |||| |||||| |||||| |||||| |||||  |||||||||||    
T  14395428 atatctaatgagaatgagttatttatgtgagaatggtgagaacacttatcaacctttggataaaaaatgaatggaccagattaaaaa 14395342  T

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Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 5664337 - 5664178
Alignment:
Q  77 atatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaagactcacatgtgt 176  Q
    ||||||||||||||||| ||| ||| |||| ||||||||||| |||| |||||| || ||| ||||||||||||||| |||| ||||| |||||||||||    
T  5664337 atatctagtgagaatgggttaattatatgagaatggtgagaacacttatcaacctttagatgaaaaataaatggttcggatttaaaagtctcacatgtgt 5664238  T
Q  177 cttaacatattctatcaattctcatcaacatattcatttgttcatcttccccaaacaacaacg 239  Q
    ||||||||||||||| |||||   |||||  |||||||||||||||||||| |||||| ||||    
T  5664237 cttaacatattctattaattc---tcaactcattcatttgttcatcttccctaaacaagaacg 5664178  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 31042780 - 31042836
Alignment:
Q  144 taaatggttcagattaaaaagactcacatgtgtcttaacatattctatcaattctca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31042780 taaatggttcagattaaaaagactcacatgtgtcttaacatattctatcaattctca 31042836  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 227
Target Start/End: Complemental strand, 29703548 - 29703399
Alignment:
Q  77 atatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaagactcacatgtgt 176  Q
    ||||||||||||||||  ||| |||  ||| ||||||||||| |||| |||||| || |||||||||| ||||||  | ||||||||   ||||||||||    
T  29703548 atatctagtgagaatgagttaattatgtgagaatggtgagaacacttatcaacctttagatcaaaaattaatggtctaaattaaaaa-cttcacatgtgt 29703450  T
Q  177 cttaacatattctatcaattctcatcaacatattcatttgttcatcttccc 227  Q
    || | | |||||||||||||||||| |||  |||  ||||||||| |||||    
T  29703449 ctcatcctattctatcaattctcattaactcatttctttgttcattttccc 29703399  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 31042729 - 31042780
Alignment:
Q  71 gaggatatatctagtgagaatggcttagttacatgacaatggtgagaatact 122  Q
    ||||| |||||||||||||||| |||||||| |||| |||||||||||||||    
T  31042729 gaggacatatctagtgagaatgacttagttatatgagaatggtgagaatact 31042780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 29535556 - 29535650
Alignment:
Q  135 gatcaaaaataaatggttcagattaaaaagactcacatgtgtcttaacatattctatcaattctcatcaacatattcatttgttcatcttccccaa 230  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  29535556 gatcaaaaataaatggtccagattaaaagg-ctcacatgtgtcttaacctattctatcaattctcatcaacacattcatttgatcatcttccccaa 29535650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 54515789 - 54515849
Alignment:
Q  103 atgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaa 163  Q
    |||| |||| ||||||||||| | |||| || ||||||| ||||||| |||||||||||||    
T  54515789 atgagaatgatgagaatacttgtgaacctttagatcaaatataaatgattcagattaaaaa 54515849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 37570005 - 37569912
Alignment:
Q  141 aaataaatggttcagattaaaaagactcacatgtgtcttaacatattctatcaattctcatcaacatattcatttgttcatcttccccaaacaaca 236  Q
    |||||||||||||||||||||||| |||||||| || ||||| ||||| |||||||||||| |||  |||||||||||||||||||||||||||||    
T  37570005 aaataaatggttcagattaaaaag-ctcacatg-gttttaacttattccatcaattctcattaactcattcatttgttcatcttccccaaacaaca 37569912  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 3130267 - 3130166
Alignment:
Q  71 gaggatatatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaagactcac 170  Q
    ||||| |||| || ||||||||  | ||||| || | |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  3130267 gaggacatatgtattgagaatgagtaagttatataagaatggtgagaatacttctcaacccttagatcaaaaataaatgattaagattaaaaagactcac 3130168  T
Q  171 at 172  Q
    ||    
T  3130167 at 3130166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 44040075 - 44040024
Alignment:
Q  103 atgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttca 154  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  44040075 atgagaatggtgagaatacttctcaacccttggatcaaaaacaaatggttca 44040024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 20940161 - 20940202
Alignment:
Q  137 tcaaaaataaatggttcagattaaaaagactcacatgtgtct 178  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  20940161 tcaaaaataaatggttgagattaaaaagtctcacatgtgtct 20940202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 221
Target Start/End: Original strand, 19402325 - 19402474
Alignment:
Q  71 gaggatatatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaagactcac 170  Q
    |||||| | |||| |||||||| |||| ||| |||| ||||||||||| |||| |||||| || ||| ||||||||||||| ||||||| ||| ||| ||    
T  19402325 gaggatgtttctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagattacaaaaacttac 19402424  T
Q  171 atgtgtcttaacatattctatcaattctcatcaacatattcatttgttcat 221  Q
    ||||||| | || |||||||||| ||||||||||   |||| |||||||||    
T  19402425 atgtgtc-tcacctattctatcatttctcatcaattcattcctttgttcat 19402474  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 48578408 - 48578499
Alignment:
Q  72 aggatatatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaa 163  Q
    |||| |||||||||||||||| |||  ||| |||| |||||||||||||| | | || | || ||| |||||| ||||||| ||||||||||    
T  48578408 aggacatatctagtgagaatgccttctttatatgagaatggtgagaatacatgttaatcattagattaaaaatgaatggttgagattaaaaa 48578499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 18543667 - 18543602
Alignment:
Q  136 atcaaaaataaatggttcagattaaaaagactcacatgtgtcttaacatattctatcaattctcat 201  Q
    |||||||||| |||||| ||||||||||  ||||||||||| | | | |||||||||| |||||||    
T  18543667 atcaaaaatagatggttgagattaaaaaatctcacatgtgtatcaccctattctatcatttctcat 18543602  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 3233464 - 3233378
Alignment:
Q  77 atatctagtgagaatggcttagttacatgacaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaa 163  Q
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T  3233464 atatctagtgaaaatgtcttctttatatgagaatggtgagaatacttcttaaccattagatctaaaataaatggataagattaaaaa 3233378  T

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