View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_13 (Length: 437)
Name: NF4586_low_13
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 49001768 - 49001643
Alignment:
| Q |
166 |
ggattgaatttaaataacagctgtcataaacatacattacttcaaggattggcacaaatacagagttataacatgcatataaacatacaaataaatatag |
265 |
Q |
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| T |
49001768 |
ggattgaatttaaataacagctgtcataaacatacattactttaaggattggcacaaatacagagttataacatgcatataaacatacaaataaatatag |
49001669 |
T |
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| Q |
266 |
aaagctaaacatgtagcaagctataa |
291 |
Q |
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| T |
49001668 |
aaagctaaacatgtagcaagctataa |
49001643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 49001933 - 49001843
Alignment:
| Q |
1 |
ttttatttagtttaagttcgactcatttaaagtttacgaaaaactcggtttgattcgttaggttaaatttgtctgctcaaatcacataatt |
91 |
Q |
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| T |
49001933 |
ttttatttagtttaagttcgactcatttaaagtttacgaaaaactcggtttgattcgttaggttaaatttgtctgctcgaatcacataatt |
49001843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 408
Target Start/End: Complemental strand, 49001593 - 49001559
Alignment:
| Q |
374 |
attccacgcacgtccatgcccacacacgtatacgc |
408 |
Q |
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| T |
49001593 |
attccacgcacgtccatgcacacacacgtatacgc |
49001559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 7029244 - 7029326
Alignment:
| Q |
9 |
agtttaagttcgactcatttaaagtttacgaaaaactcggtttgattcgttaggttaaatttgtctgctcaaatcacataatt |
91 |
Q |
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| T |
7029244 |
agtttaagttcggctcgtttaaagtttacgaacaatttggttaggttctttaggtttagtttgtttgctcaaatcacataatt |
7029326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 22563374 - 22563448
Alignment:
| Q |
15 |
agttcgactcatttaaagtttacgaaaaactcggtttgattcgttaggttaaatttgtctgctcaaatcacataa |
89 |
Q |
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| T |
22563374 |
agttcgactcgtttaaggttcacgaacagttcggttcggttcgttaggttcaatttgtttgctcaaatcacataa |
22563448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 17865696 - 17865648
Alignment:
| Q |
43 |
actcggtttgattcgttaggttaaatttgtctgctcaaatcacataatt |
91 |
Q |
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| T |
17865696 |
actcggttcgactcgttaggttcaatttgtttgctcgaatcacataatt |
17865648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 27195539 - 27195606
Alignment:
| Q |
15 |
agttcgactcatttaaagtttacgaaaaactcggtttgattcgttaggttaaatttgtctgctcaaat |
82 |
Q |
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| T |
27195539 |
agttcggctcgtttaaagttcacgaacagctcggtttgattcgttaggttcaacttgcctactcaaat |
27195606 |
T |
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