View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_14 (Length: 425)
Name: NF4586_low_14
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 8954055 - 8953786
Alignment:
| Q |
14 |
atcacgagtttacatagtgaaacaatatagaaggatagatgagttggaaaagcaaaaataattgtgattaagccaagtccaccatatagttgcggcaaaa |
113 |
Q |
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| T |
8954055 |
atcacgggcttacatagtgaaacaatatagaatgatagatgagttggaagagcaaaaataattgtgattaagccaagtccaccatatagttgcggcaaaa |
8953956 |
T |
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| Q |
114 |
gtgttggagttgatcgaagatagaccctctttgagccaactgattatgtctaagtcggaaaggaagtcaacattggataaaccaagagcatgccaaagat |
213 |
Q |
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| T |
8953955 |
gtgttggagttgatcgaagatagaccctctttgagccaacagattacgtctaagtcggaaaggaagtcaacattggataaaccaagagcatgccaaagat |
8953856 |
T |
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| Q |
214 |
ttctagaagctgaacagtctatattataataaaggaatgactcattatgcttattacatcggggacatag |
283 |
Q |
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| T |
8953855 |
ttctagaagctaaatagtctatattacaataaatgaatgactcattatgtttattacatcggggacatag |
8953786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 278 - 408
Target Start/End: Complemental strand, 8951705 - 8951580
Alignment:
| Q |
278 |
acatagaccattaagagccaagttgcggcggtgaaacaataacatggtggggacaaaattattgcaagaaacccaaataaggaacttgatcttttttgaa |
377 |
Q |
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| T |
8951705 |
acatagaccattaagagccaag-----gcggcgaaacaataacatggtggggacaaaattattgcaagaaaatcaaataaggaacttgatcttttttgga |
8951611 |
T |
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| Q |
378 |
agatggaggcgtcatattaaagaccatgtta |
408 |
Q |
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| T |
8951610 |
agatggaggcttcatattaaagaccatgtta |
8951580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 9367145 - 9367210
Alignment:
| Q |
63 |
aagcaaaaataattgtgattaagccaagtccaccatatagttgcggcaaaagtgttggagttgatc |
128 |
Q |
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||||||||||||||||||||| | |||| |||||| ||| ||||| ||||||||||||| |||||| |
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| T |
9367145 |
aagcaaaaataattgtgattatgtcaagaccaccaaatacttgcgacaaaagtgttggacttgatc |
9367210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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