View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_17 (Length: 394)
Name: NF4586_low_17
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 66 - 372
Target Start/End: Complemental strand, 33857515 - 33857203
Alignment:
| Q |
66 |
tggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgtttatttaattgt |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33857515 |
tggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgtttatttaattgt |
33857416 |
T |
|
| Q |
166 |
agagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagattcccaaggacataaaatgcatgaacccctatttta |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33857415 |
agagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagtttcccaaggacataaaatgcatgaacccctatttta |
33857316 |
T |
|
| Q |
266 |
ataatccaaagatatagacttcatcagttcatta---cgtggaaaaattctatcatcaattagttt---ttcttcaacaatgcagtgtgtcacaacttaa |
359 |
Q |
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||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33857315 |
atactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagtttttcttcttcaacaatgcagtgtgtcacaacttaa |
33857216 |
T |
|
| Q |
360 |
tccatcaattagt |
372 |
Q |
| |
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||||||||||||| |
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| T |
33857215 |
tccatcaattagt |
33857203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 66 - 372
Target Start/End: Original strand, 33923408 - 33923720
Alignment:
| Q |
66 |
tggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgtttatttaattgt |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33923408 |
tggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgtttatttaattgt |
33923507 |
T |
|
| Q |
166 |
agagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagattcccaaggacataaaatgcatgaacccctatttta |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33923508 |
agagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagtttcccaaggacataaaatgcatgaacccctatttta |
33923607 |
T |
|
| Q |
266 |
ataatccaaagatatagacttcatcagttcatta---cgtggaaaaattctatcatcaattagttt---ttcttcaacaatgcagtgtgtcacaacttaa |
359 |
Q |
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||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33923608 |
atactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagtttttcttcttcaacaatgcagtgtgtcacaacttaa |
33923707 |
T |
|
| Q |
360 |
tccatcaattagt |
372 |
Q |
| |
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||||||||||||| |
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| T |
33923708 |
tccatcaattagt |
33923720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 253 - 367
Target Start/End: Complemental strand, 47872674 - 47872562
Alignment:
| Q |
253 |
aacccctattttaataatccaaagatatagacttcatcagttcattacgtggaaaaattctatcatcaattagtttttcttcaacaatgcagtgtgtcac |
352 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||| || ||| |||||||||| || || |||||||||||||||| ||||||| |
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| T |
47872674 |
aacccctattttaatactccaaagatatagactccatcagttcattacatgacaaatttctatcatcgat--gtagttcttcaacaatgcagagtgtcac |
47872577 |
T |
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| Q |
353 |
aacttaatccatcaa |
367 |
Q |
| |
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||||||||||||||| |
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| T |
47872576 |
aacttaatccatcaa |
47872562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 253 - 370
Target Start/End: Original strand, 49547324 - 49547446
Alignment:
| Q |
253 |
aacccctattttaataatccaaagatatagacttcatcagttcattacgtggaaaaattctatcatca---attagttt--ttcttcaacaatgcagtgt |
347 |
Q |
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|||||||||||||||| |||||||||||| ||| ||| ||||||||||||| |||||||||||||||| || ||||| |||| ||||| ||||| || |
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| T |
49547324 |
aacccctattttaatactccaaagatataaactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagt |
49547423 |
T |
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| Q |
348 |
gtcacaacttaatccatcaatta |
370 |
Q |
| |
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| | ||||||||||||||||||| |
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| T |
49547424 |
gacccaacttaatccatcaatta |
49547446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 487266 - 487304
Alignment:
| Q |
222 |
acattagattcccaaggacataaaatgcatgaaccccta |
260 |
Q |
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||||||| |||||| |||||||||||||||||||||||| |
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| T |
487266 |
acattagtttcccatggacataaaatgcatgaaccccta |
487304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 14961855 - 14961823
Alignment:
| Q |
219 |
tggacattagattcccaaggacataaaatgcat |
251 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
14961855 |
tggacattagtttcccaaggacataaaatgcat |
14961823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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