View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4586_low_18 (Length: 388)
Name: NF4586_low_18
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 46097978 - 46098332
Alignment:
| Q |
18 |
atccttagccaacactgcactcatgtccctaacaaaattgcttttattggttcgggaccccttccccttacttcaattgtcttggcatcgaaccacttac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46097978 |
atccttagccaacactgcactcatgtccctaacaaaattgcttttattggttcgggaccccttccccttacttcaattgtcttggcatggaaccacttac |
46098077 |
T |
|
| Q |
118 |
cttcaaccacttttcacaactacgacatcgaccctttagccaattcaagtgctaagcacttggtttcatctgatcctgacttgtcaaaccgtatggtttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46098078 |
cttcaaccacttttcacaactacgacatcgaccctttagccaattcaagtgctaagcacttggtttcatctgatcctgacttgtcaaaccgtatggtttt |
46098177 |
T |
|
| Q |
218 |
tcacaccaatgatatattggatgtgtcaaatgatttgaaagactatgagattgtttacttagctgccctggtcggtatggacaaggaggnnnnnnntcga |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46098178 |
tcacaccaatgatatattggacgtgtcaaatgatttgaaagactatgaaattgtttacttagctgccctggtcggtatggacaaggaggaaaaaaatcga |
46098277 |
T |
|
| Q |
318 |
atcattgatcacttggggaagcacatggccccaggagcacttcttatgttaagga |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46098278 |
atcattgatcacttggggaagcacatggccccaggagcacttcttatgttaagga |
46098332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 128 - 274
Target Start/End: Original strand, 37484852 - 37484998
Alignment:
| Q |
128 |
ttttcacaactacgacatcgaccctttagccaattcaagtgctaagcacttggtttcatctgatcctgacttgtcaaaccgtatggtttttcacaccaat |
227 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||| | ||| ||||||||| ||||||||||| || ||||| |||||| ||||| |||||||| |
|
|
| T |
37484852 |
ttttcacaactatgactttgaccctttagccaattccaaagcttcttgcttggtttcctctgatcctgaattatcaaagcgtatgtttttttacaccaat |
37484951 |
T |
|
| Q |
228 |
gatatattggatgtgtcaaatgatttgaaagactatgagattgttta |
274 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||| ||||||| |
|
|
| T |
37484952 |
gatatattggatgtttcaaatgctttgaaagaatatgaagttgttta |
37484998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University