View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_20 (Length: 346)
Name: NF4586_low_20
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 33857519 - 33857203
Alignment:
| Q |
14 |
gagatggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgtttatttaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33857519 |
gagatggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgtttatttaa |
33857420 |
T |
|
| Q |
114 |
ttgtagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagattcccaaggacataaaatgcatgaacccctat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33857419 |
ttgtagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagtttcccaaggacataaaatgcatgaacccctat |
33857320 |
T |
|
| Q |
214 |
tttaataatccaaagatatagacttcatcagttcatta---cgtggaaaaattctatcatcaattagttt---ttcttcaacaatgcagtgtgtcacaac |
307 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33857319 |
tttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagtttttcttcttcaacaatgcagtgtgtcacaac |
33857220 |
T |
|
| Q |
308 |
ttaatccatcaattagt |
324 |
Q |
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||||||||||||||||| |
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| T |
33857219 |
ttaatccatcaattagt |
33857203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 33923404 - 33923720
Alignment:
| Q |
14 |
gagatggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgtttatttaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33923404 |
gagatggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgtttatttaa |
33923503 |
T |
|
| Q |
114 |
ttgtagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagattcccaaggacataaaatgcatgaacccctat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33923504 |
ttgtagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagtttcccaaggacataaaatgcatgaacccctat |
33923603 |
T |
|
| Q |
214 |
tttaataatccaaagatatagacttcatcagttcatta---cgtggaaaaattctatcatcaattagttt---ttcttcaacaatgcagtgtgtcacaac |
307 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33923604 |
tttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagtttttcttcttcaacaatgcagtgtgtcacaac |
33923703 |
T |
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| Q |
308 |
ttaatccatcaattagt |
324 |
Q |
| |
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||||||||||||||||| |
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| T |
33923704 |
ttaatccatcaattagt |
33923720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 205 - 319
Target Start/End: Complemental strand, 47872674 - 47872562
Alignment:
| Q |
205 |
aacccctattttaataatccaaagatatagacttcatcagttcattacgtggaaaaattctatcatcaattagtttttcttcaacaatgcagtgtgtcac |
304 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||| || ||| |||||||||| || || |||||||||||||||| ||||||| |
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| T |
47872674 |
aacccctattttaatactccaaagatatagactccatcagttcattacatgacaaatttctatcatcgat--gtagttcttcaacaatgcagagtgtcac |
47872577 |
T |
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| Q |
305 |
aacttaatccatcaa |
319 |
Q |
| |
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||||||||||||||| |
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| T |
47872576 |
aacttaatccatcaa |
47872562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 49547324 - 49547446
Alignment:
| Q |
205 |
aacccctattttaataatccaaagatatagacttcatcagttcattacgtggaaaaattctatcatca---attagttt--ttcttcaacaatgcagtgt |
299 |
Q |
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|||||||||||||||| |||||||||||| ||| ||| ||||||||||||| |||||||||||||||| || ||||| |||| ||||| ||||| || |
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| T |
49547324 |
aacccctattttaatactccaaagatataaactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagt |
49547423 |
T |
|
| Q |
300 |
gtcacaacttaatccatcaatta |
322 |
Q |
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| | ||||||||||||||||||| |
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| T |
49547424 |
gacccaacttaatccatcaatta |
49547446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 487266 - 487304
Alignment:
| Q |
174 |
acattagattcccaaggacataaaatgcatgaaccccta |
212 |
Q |
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||||||| |||||| |||||||||||||||||||||||| |
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| T |
487266 |
acattagtttcccatggacataaaatgcatgaaccccta |
487304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 14961855 - 14961823
Alignment:
| Q |
171 |
tggacattagattcccaaggacataaaatgcat |
203 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
14961855 |
tggacattagtttcccaaggacataaaatgcat |
14961823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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