View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4586_low_21 (Length: 344)
Name: NF4586_low_21
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_21 |
 | |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 24941295 - 24940958
Alignment:
| Q |
1 |
taaaacggggcacaggaacacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattcca |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24941295 |
taaaacggggcacaggaacacaaatcaaaggatgagcccttggaagggttacagcggatttctcttccatgttaactttcccattaccatcaacattcca |
24941196 |
T |
|
| Q |
101 |
ttcaaaacactgaatcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24941195 |
ttcaaaacactgaatcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagt |
24941096 |
T |
|
| Q |
201 |
tggaaattttgtcccctcacatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgc |
300 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24941095 |
tggaaattttgtcccctcgcatcgaacttattatcttcctcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgc |
24940996 |
T |
|
| Q |
301 |
ccatcgaccataagttaacaaataaaacggtctctgct |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24940995 |
ccatcgaccataagttaacaaataaaacggtctttgct |
24940958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 25169731 - 25169394
Alignment:
| Q |
1 |
taaaacggggcacaggaacacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattcca |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
25169731 |
taaaacgcggcacaggaacacaaatcaaaggatgagcccttggaagggtcacggccggtttctcttccatgtcaactttcccattaccatcaacattcca |
25169632 |
T |
|
| Q |
101 |
ttcaaaacactgaatcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
25169631 |
ttcaaaacactgaatcattgcagcaagatttgtgggaacaacttgaagtgctaataagtaaccagggcaagcccttctaccagttccaaatggcataagt |
25169532 |
T |
|
| Q |
201 |
tggaaattttgtcccctcacatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgc |
300 |
Q |
| |
|
||||||||||| ||||||| ||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| || | |
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|
| T |
25169531 |
tggaaattttgccccctcatatcgaacttgttattttcttcacacataaacctctctggcctgaactcaagtgggttttcccacaatttggggtctctac |
25169432 |
T |
|
| Q |
301 |
ccatcgaccataagttaacaaataaaacggtctctgct |
338 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
25169431 |
ccattgaccataagttaacaaataaaacggtctttgct |
25169394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 135 - 327
Target Start/End: Original strand, 38807610 - 38807799
Alignment:
| Q |
135 |
ggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccctcacatcaaacttattat |
234 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||| ||||| ||| |||||||||| |||| |||||||||||||||||||||||| |||||||| |
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|
| T |
38807610 |
ggaacaacttgaagtgctaatgagacaccagggcaagctcttcttccagttccaaatggtataaattggaaattttgtcccctcacatctaacttatt-- |
38807707 |
T |
|
| Q |
235 |
cttcttcactcat-aaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgcccatcgaccataagttaacaaataaaa |
327 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||| || |||||||| || | |||||| |||| | || || ||||||||||||| |
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|
| T |
38807708 |
-cacttcactcataaaacctctc-ggcctaaactcaagtggattctcccacagttttgagtccctatccattgttcacaaattaacaaataaaa |
38807799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 12275 - 11969
Alignment:
| Q |
18 |
acacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatca |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| | |||| |||| |||| |||||||||||||||||||||| |
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|
| T |
12275 |
acacatatcaaaggatgagcccttggaagggtggttgaaggtttctcttccatgttaactgttccatcaccaccaactttccattcaaaacactgaatca |
12176 |
T |
|
| Q |
118 |
ttgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccct |
217 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| | |||||| |||||| ||| ||| ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
12175 |
ttgcagcaagatttgttggaacagcttgaagtgctaatgaggcaccggggcaaccccgtcttccagttccgaatggcataagttggaaattttgtcccct |
12076 |
T |
|
| Q |
218 |
cacatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgcccatcgaccataagtta |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || | |||||| ||| || ||||||| || |||||||| ||||| ||||| || ||| |
|
|
| T |
12075 |
cacatcaaacttatt---ctcttcactcataaacctctccggtttaaactcatatggattctcccacaattttgggtcccttcccattgaccacaaatta |
11979 |
T |
|
| Q |
318 |
acaaataaaa |
327 |
Q |
| |
|
|||||||||| |
|
|
| T |
11978 |
acaaataaaa |
11969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 20061 - 19755
Alignment:
| Q |
18 |
acacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatca |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||| || |||| |||||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
20061 |
acacaaatcaaaggatgagcccttggaaggctcgtggccgctttctcatccatgttaacttttccattaccaccaaccttccattcaaaacactgaatca |
19962 |
T |
|
| Q |
118 |
ttgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccct |
217 |
Q |
| |
|
|||| ||||||||||| |||||| | ||||||||||| | ||||||||||||| ||| || ||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
19961 |
ttgcggcaagatttgtcggaacagcctgaagtgctaatgaagcaccagggcaagacctccttccagttccaaatggcataaattggaaattttgtcccct |
19862 |
T |
|
| Q |
218 |
cacatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgcccatcgaccataagtta |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| | |||||| ||| || ||||||| || |||||||| ||||| ||||| || ||| |
|
|
| T |
19861 |
cacatcaaacttatt---ctcttcactcataaacctctctggtttaaactcatatggattctcccacaattttgggtcccttcccatggaccacaaatta |
19765 |
T |
|
| Q |
318 |
acaaataaaa |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
19764 |
ctaaataaaa |
19755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 25910 - 25648
Alignment:
| Q |
18 |
acacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatca |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || | ||||||||||||| ||||| | ||||||||| |||| ||| |||||||||||||||| | |
|
|
| T |
25910 |
acacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccaccaaccttcaattcaaaacactgaataa |
25811 |
T |
|
| Q |
118 |
ttgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccct |
217 |
Q |
| |
|
| |||||||||||||| |||||||||||||| || || | || |||||| ||||| ||||| ||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
25810 |
tagcagcaagatttgttggaacaacttgaagcgcgaatgaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaaattttgtcccct |
25711 |
T |
|
| Q |
218 |
cacatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttccca |
283 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
25710 |
tagatcaaacttatt---cccttcactcataaacctctctggtttaaactcaagtggattttccca |
25648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 9555 - 9878
Alignment:
| Q |
1 |
taaaacggggcacaggaacacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattcca |
100 |
Q |
| |
|
||||||| || | ||| ||||| ||||||||||||||||| |||||||||| || ||||||||||||||||||||| | |||| |||| ||| ||||| |
|
|
| T |
9555 |
taaaacgaggaatagggacacacatcaaaggatgagccctaggaagggtcaaagctggtttctcttccatgttaactgttccatcaccactaaccttcca |
9654 |
T |
|
| Q |
101 |
ttcaaaacactgaatcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagt |
200 |
Q |
| |
|
| |||||| ||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||| ||| |||||||||||||| | |
|
|
| T |
9655 |
ataaaaacattgaatcattgcagcaagatttgttggaacagcttgaagtgctaatgaagcaccagggcaagcccttcttccagttccaaatggcatatat |
9754 |
T |
|
| Q |
201 |
tggaaattttgtcccctcacatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgc |
300 |
Q |
| |
|
|| ||||| |||||| | | |||||||||||| ||||||||||||||||||| ||| ||||||| || || ||||||||||| || || ||| | | |
|
|
| T |
9755 |
tgcaaattctgtcccttaaaatcaaacttatt---cccttcactcataaacctctccggcttgaactcgagcggattttcccacagtttgggatccttac |
9851 |
T |
|
| Q |
301 |
ccatcgaccataagttaacaaataaaa |
327 |
Q |
| |
|
|||| ||||| || | ||||||||||| |
|
|
| T |
9852 |
ccattgaccacaaatcaacaaataaaa |
9878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 36735598 - 36735471
Alignment:
| Q |
9 |
ggcacaggaacacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattacca---tcaacattccattcaa |
105 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||| |||||||| | | |||||||||||||| ||||| ||||||||||| | ||| |||||||||| |
|
|
| T |
36735598 |
ggcacagggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaa |
36735499 |
T |
|
| Q |
106 |
aacactgaatcattgcagcaagatttgt |
133 |
Q |
| |
|
|||| |||||||| |||||||||||||| |
|
|
| T |
36735498 |
aacattgaatcatagcagcaagatttgt |
36735471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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