View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_22 (Length: 338)
Name: NF4586_low_22
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 50088200 - 50088527
Alignment:
| Q |
1 |
acatgtaacaggtggtttgaaacaagcatagtcaacgaggtagattgtgcgtggttttgacatgaaataaacagtggctataaaaatgacaaggaaagaa |
100 |
Q |
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| T |
50088200 |
acatgtaacaggtggtttgaaacaagcatagtcaacgaggtagattgtgcgtggttttgacatgaaataaacagtggctataaaaatgacaaggaaagaa |
50088299 |
T |
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| Q |
101 |
gaacataggatttgaacaaggtttaagtttagtgagttccaaagattgaggatttcatttgggcctaaacgtattaattcaatggaaacaccaatcatga |
200 |
Q |
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| T |
50088300 |
gaacataggatttgaacaaggtttaagtttagtgagttccaaagattgaggatttcatttgggcctaaacgtattaattcaatggaaacaccaatcatga |
50088399 |
T |
|
| Q |
201 |
ttggaataagagtgagtgttataatgtgattaacaagatattggtaaccaagtttgacatatttgagcttaactgagctagagaaatcaggcaagattgg |
300 |
Q |
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| T |
50088400 |
ttggaataagagtgagtgttataatgtgattaacaagatattggtaaccaagtttgacatatttgagcttaactgagctagagaaatcaggcaagattgg |
50088499 |
T |
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| Q |
301 |
aggcatgtttgttgtttgagaaaagtgc |
328 |
Q |
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|||||||||| ||||||||||||||||| |
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| T |
50088500 |
aggcatgttttttgtttgagaaaagtgc |
50088527 |
T |
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