View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4586_low_23 (Length: 337)
Name: NF4586_low_23
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_23 |
 | |
|
| [»] scaffold0343 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0343 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0343
Description:
Target: scaffold0343; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 5636 - 5317
Alignment:
| Q |
1 |
ggtaaaatttatttcatttcaaataggcacttaatgctacattttacacttttcacatgaacacggaaaactgatacattaaatacacaaacaactaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
5636 |
ggtaaaatttatttcatttcaaataggcacttaatgctacattttacacttttcacatgaacacagaaaacacatacattaaatacactaacaactaatt |
5537 |
T |
|
| Q |
101 |
tccttacgtaaggggaggacttccttcgcacttttgattttatacaattacattattctttttctgatcttgatccgccgattctcaggagaaatgggca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||| ||||||||| ||||||||||||| |
|
|
| T |
5536 |
tccttacgtaaggggaggacttccttcgcacctttgattttagacaattacattattctttttctagtcttaatcctccgattctcgggagaaatgggca |
5437 |
T |
|
| Q |
201 |
ttggtaatgcgaagttcagccaagaggtaaataatgttggtca--atatgatgagaacaacgataagctagagggtgggtgaatgtacaagccaaagtaa |
298 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
5436 |
ttggtaatgcgaagttcagccaggaggtaaataatgttggacattatatgatgagaacaacgataagctagagcgtgggtgaatttacaagccaaagtaa |
5337 |
T |
|
| Q |
299 |
atgaattcatatttgatggt |
318 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
5336 |
atgaattcctatttgatggt |
5317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University