View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_25 (Length: 333)
Name: NF4586_low_25
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 47705505 - 47705209
Alignment:
| Q |
17 |
atgaacctacaaggttacaagttgagctcaccaattccaagcaaagacccaaataatcgttctatacttgctttctttgctggaggggaacatggtatga |
116 |
Q |
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| T |
47705505 |
atgaacctacaaggttacaagttgagctcaccaattccaagcaaagaatcaaataatcgttctatacttgctttctttgctggaggggaacatggtatga |
47705406 |
T |
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| Q |
117 |
ttagaaagacattactagatcaatggaaaggaaaagataaagaagtactagtgtatgaatatcttccnnnnnnncttaagtactttaaactcatgggaaa |
216 |
Q |
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| T |
47705405 |
ttagaaagacattactagatcaatggaaaggaaaagataaagaagtactagtgtatgaatatcttccaaaaaaacttaagtactttaaactcatgggaaa |
47705306 |
T |
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| Q |
217 |
aagcaagttttgcttgtgtccaagtggctatgaagtagctagccctagacttgtggagtctataaacactggatgtgtccctgtgattgtttcggat |
313 |
Q |
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| T |
47705305 |
aagcaagttttgcttgtgtccaagtggctatgaagtagctagccctagacttgtggagtctataaacactggatgtgtccctgtgattgtttcggat |
47705209 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 44629169 - 44629206
Alignment:
| Q |
218 |
agcaagttttgcttgtgtccaagtggctatgaagtagc |
255 |
Q |
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| T |
44629169 |
agcaagttttgtttgtgtccaagtggttatgaagtagc |
44629206 |
T |
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