View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4586_low_3 (Length: 630)
Name: NF4586_low_3
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 6 - 566
Target Start/End: Original strand, 34097114 - 34097670
Alignment:
| Q |
6 |
gtagattattcttctaatcacatcaaatactgatgttggtgatgctcgtagaggtatttatcatttcatagggtactacggttatcctagtgaaagttga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34097114 |
gtagattattcttctaatcacatcaaatactgatgttggtgatgctcgtagaggtgtttatcgtttcatagggtactacggttatcctagtgaaagttga |
34097213 |
T |
|
| Q |
106 |
aagcgggattcatggaactttatttgtgatttttcgcaaaatatttctatttcgtggtgcatcattagggattttaatgatatattggatgctcatgagg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34097214 |
aagcgggattcatggaactttatttgtgatttctcgcaaaatatttatatttcgtggtgcatcattagggattttaatgatatattggatgctcatgagg |
34097313 |
T |
|
| Q |
206 |
aaaaaaggaagaattaagaggcctaattggtttattaacgaattaagacaggcggtattagattatgggttgtagttatatgtccaaatggaaggaaggc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34097314 |
aaaaaaggaagaattaagaggcctaattggtttattaacgaattaagacatgcgatattagattatgggtt---gttatatgtccaaatggaaggaaggc |
34097410 |
T |
|
| Q |
306 |
taccattttacctggttttcaagtccaggcaac-cactccttgtgttttttagaagagattagagactatgctcttactagtgaaatgtggtttcaaatt |
404 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34097411 |
taccattttacctggtttcaaagtccaggcaacattctccttgtgttttttagaagagatt--agactatgctcttagtagtgaaatgtggtttcaaatt |
34097508 |
T |
|
| Q |
405 |
ttttccaatgctaagttgctcctgcatattgtcatcatcccatcctccttgatgtttatcccattgtgaggccttgcagaactcgatgtacattcaaatt |
504 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34097509 |
tttcccaatgctaagttgctcctgcatattgtcatcatcccatcctccttgatatttatcccattgtgagaccttgcagaactcgatgtacattcaaatt |
34097608 |
T |
|
| Q |
505 |
caaaaacacatggtgtgtggagcctggcttgaatgatgtggttcatgccaagttgcaaagta |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34097609 |
caaaaacacatggtgtgtggagcctggcttgaatgatgtggttcatgccaagttgcaaagta |
34097670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University