View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_30 (Length: 287)
Name: NF4586_low_30
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 4179468 - 4179721
Alignment:
| Q |
17 |
atgaacacgatgatgatcatgaggctcaccttgttttctggaatgaaattgatggccaatttcctctgttctctcccctcttttatgttcaggcaaatat |
116 |
Q |
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| T |
4179468 |
atgaacacgatgatgatcatgaggctcgccttgttttctggaatgaaattgatggccaatttcctctgttctctcccctcttttatgttcaggcaaatat |
4179567 |
T |
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| Q |
117 |
attcacatatttattttatttaatttttggtaaatgatgttcatgttgaggtagcatatatcaaacctagatcatctatagtcgttttaggttgcagtcg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4179568 |
attcacatatttattttatttaatttttggtaaatgatgttcatgttgaggtagcatatatcaaacctagatcatctatagttgttttaggttgcagtcg |
4179667 |
T |
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| Q |
217 |
attgttgttcattagattaagagagataatatctatctctcttaatctaatggt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179668 |
attgttgttcattagattaagagagataatatctatctctcttaatctaatggt |
4179721 |
T |
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