View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4586_low_38 (Length: 260)

Name: NF4586_low_38
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4586_low_38
NF4586_low_38
[»] chr4 (16 HSPs)
chr4 (20-204)||(36512697-36512886)
chr4 (159-204)||(12074178-12074223)
chr4 (160-204)||(24772671-24772715)
chr4 (160-204)||(40721991-40722035)
chr4 (156-204)||(44170646-44170694)
chr4 (157-204)||(36444422-36444469)
chr4 (161-204)||(45548811-45548854)
chr4 (160-198)||(13139148-13139186)
chr4 (158-204)||(35661624-35661670)
chr4 (157-198)||(2999109-2999150)
chr4 (160-201)||(35332706-35332747)
chr4 (159-204)||(38133979-38134024)
chr4 (157-190)||(41609720-41609753)
chr4 (158-198)||(6126851-6126891)
chr4 (160-204)||(30866353-30866397)
chr4 (157-193)||(53384227-53384263)
[»] chr8 (15 HSPs)
chr8 (157-204)||(27630894-27630941)
chr8 (160-197)||(40517269-40517306)
chr8 (157-201)||(3950107-3950151)
chr8 (160-204)||(20852919-20852963)
chr8 (158-204)||(2768145-2768191)
chr8 (160-198)||(9314411-9314449)
chr8 (158-204)||(39021470-39021516)
chr8 (157-198)||(6445172-6445213)
chr8 (158-199)||(28570439-28570480)
chr8 (158-199)||(28578032-28578073)
chr8 (159-204)||(37873132-37873177)
chr8 (160-204)||(10344324-10344368)
chr8 (160-204)||(20473779-20473823)
chr8 (160-204)||(43403831-43403875)
chr8 (160-204)||(43873718-43873762)
[»] chr1 (20 HSPs)
chr1 (157-204)||(50062001-50062048)
chr1 (158-204)||(43755705-43755751)
chr1 (158-204)||(51466767-51466813)
chr1 (157-198)||(33125356-33125397)
chr1 (160-204)||(46947981-46948025)
chr1 (160-204)||(49699779-49699823)
chr1 (157-204)||(1156476-1156523)
chr1 (159-198)||(32873340-32873379)
chr1 (157-204)||(40610226-40610273)
chr1 (157-204)||(49596232-49596279)
chr1 (157-198)||(29706736-29706777)
chr1 (159-204)||(30439249-30439294)
chr1 (159-204)||(39669805-39669850)
chr1 (159-204)||(51193158-51193203)
chr1 (160-204)||(6841789-6841833)
chr1 (156-204)||(8934623-8934671)
chr1 (160-204)||(13411954-13411998)
chr1 (158-198)||(23554749-23554789)
chr1 (160-204)||(42299213-42299257)
chr1 (157-201)||(48678983-48679027)
[»] chr7 (12 HSPs)
chr7 (159-204)||(44894500-44894545)
chr7 (158-201)||(7990077-7990120)
chr7 (160-204)||(26904729-26904773)
chr7 (157-204)||(16567313-16567360)
chr7 (157-204)||(16598302-16598349)
chr7 (157-204)||(38096466-38096513)
chr7 (163-204)||(2741916-2741957)
chr7 (157-198)||(35586806-35586847)
chr7 (158-198)||(5068656-5068696)
chr7 (160-204)||(23329902-23329946)
chr7 (158-190)||(28862111-28862143)
chr7 (160-204)||(42663084-42663128)
[»] chr3 (13 HSPs)
chr3 (157-204)||(47849669-47849716)
chr3 (157-198)||(37585427-37585468)
chr3 (158-198)||(20549418-20549458)
chr3 (160-204)||(20893269-20893313)
chr3 (160-204)||(28300286-28300330)
chr3 (159-198)||(24095439-24095478)
chr3 (158-204)||(52727475-52727521)
chr3 (157-198)||(35755981-35756022)
chr3 (158-198)||(349446-349486)
chr3 (160-204)||(19418184-19418228)
chr3 (160-204)||(37754447-37754491)
chr3 (160-204)||(49130854-49130898)
chr3 (160-204)||(55466958-55467002)
[»] chr2 (14 HSPs)
chr2 (157-204)||(2013312-2013359)
chr2 (158-204)||(34442111-34442157)
chr2 (157-198)||(9634469-9634510)
chr2 (160-197)||(38257327-38257364)
chr2 (158-198)||(18508076-18508116)
chr2 (158-197)||(1095859-1095898)
chr2 (157-204)||(10749706-10749753)
chr2 (157-204)||(34139065-34139112)
chr2 (158-204)||(43994040-43994086)
chr2 (157-198)||(36517193-36517234)
chr2 (158-198)||(4114454-4114494)
chr2 (160-204)||(36816443-36816487)
chr2 (160-204)||(39247490-39247534)
chr2 (158-198)||(40371117-40371157)
[»] chr5 (9 HSPs)
chr5 (160-198)||(30420626-30420664)
chr5 (158-198)||(21012566-21012606)
chr5 (156-204)||(38500939-38500987)
chr5 (159-198)||(38704230-38704269)
chr5 (156-198)||(7144573-7144615)
chr5 (160-198)||(34124621-34124659)
chr5 (157-198)||(19481215-19481256)
chr5 (157-198)||(32912035-32912076)
chr5 (160-204)||(12661974-12662018)
[»] scaffold0154 (1 HSPs)
scaffold0154 (159-204)||(4314-4359)
[»] scaffold0002 (1 HSPs)
scaffold0002 (160-204)||(6427-6471)
[»] chr6 (6 HSPs)
chr6 (156-204)||(11785351-11785399)
chr6 (157-199)||(11635614-11635656)
chr6 (158-198)||(16368080-16368120)
chr6 (160-204)||(21857594-21857638)
chr6 (160-204)||(27102115-27102159)
chr6 (160-204)||(27143937-27143981)
[»] scaffold0204 (1 HSPs)
scaffold0204 (157-204)||(27336-27383)
[»] scaffold0009 (1 HSPs)
scaffold0009 (157-204)||(190909-190956)
[»] scaffold0238 (1 HSPs)
scaffold0238 (160-204)||(16387-16431)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 36512697 - 36512886
Alignment:
Q  20 tgttttgcctcatgcacaaggcgtttgggctcatgttcgtgtaattttttctagttgcccgtcatgcacgagtattgaagtgatttgatttcagaattga 119  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36512697 tgttttgcctcatgcacaaggcgtatgggctcatgtgcgtgtaattttttctagttgcccgtcatgcacgagtattgaagtgatttgatttcagaattta 36512796  T
Q  120 caacatttgacaccc-------agttaaggggtaannnnnnnncaaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||||||||       |||||||||||||        ||||||||||||||||||||||||  ||||||| | || ||||||||||    
T  36512797 caacatttgacacccattgtagagttaaggggtaa--ttttttcaaagagaaattatatttgtacatttattttataacaactttttgacaa 36512886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 12074223 - 12074178
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||    
T  12074223 agagaaatgatatttgtacaaccattttatgacaattttttgacaa 12074178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 24772671 - 24772715
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||    
T  24772671 gagaaatgatatttgtacatccattttatgacaactttttgacaa 24772715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 40722035 - 40721991
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||||    
T  40722035 gagaaatgatatttgtacatccattttataataatttttggacaa 40721991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 44170694 - 44170646
Alignment:
Q  156 caaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  44170694 caaagagaaatgatatttgtacaaccattttgttataattttttgacaa 44170646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 36444469 - 36444422
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| ||||||||||| |||||||||||||| ||||| ||||    
T  36444469 aaagagaaatgatatttgtacaaccattttatgataactttttaacaa 36444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 45548854 - 45548811
Alignment:
Q  161 agaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||| ||||||||||| ||||||| |||||||||||||||||    
T  45548854 agaaatgatatttgtacaaccattttgtgataattttttgacaa 45548811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 13139148 - 13139186
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  13139148 gagaaatgatatttgaacatccattttatgataattttt 13139186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 35661670 - 35661624
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||| ||||||||||| ||||||||||| ||||||| |||||    
T  35661670 aagagaaatgatatttgtacaaccattttatgacaatttttagacaa 35661624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 2999109 - 2999150
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||| ||||||| ||||||||||||||| |||||||    
T  2999109 aaagagaaatgatatttgaacatccattttatgacaattttt 2999150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 35332706 - 35332747
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttga 201  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||    
T  35332706 gagaaatgatatttgtacaaccactttatgataattttttga 35332747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 38133979 - 38134024
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||||||||||||| ||| ||| ||| |||||||||||||    
T  38133979 agagaaattatatttgtacaaccactttgtgacaattttttgacaa 38134024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 41609753 - 41609720
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatga 190  Q
    |||||||||| |||||||||||||||||||||||    
T  41609753 aaagagaaatgatatttgtacatccattttatga 41609720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 6126851 - 6126891
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||||| ||||||||||||| ||||||||| |||||||    
T  6126851 aagagaaatcatatttgtacatctattttatgacaattttt 6126891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 30866353 - 30866397
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| |||||||||||  ||||||||||||| ||||||||||    
T  30866353 gagaaatgatatttgtacaatcattttatgataaatttttgacaa 30866397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 53384227 - 53384263
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataa 193  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  53384227 aaagagcaataatatttgtacatccattttatgataa 53384263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 27630894 - 27630941
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||    
T  27630894 aaagagaaatgatatttgtacatccattttatgacaattttttgacaa 27630941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 40517269 - 40517306
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataatttt 197  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  40517269 gagaaattatatttgtacaaccattttatgataatttt 40517306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 3950107 - 3950151
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttga 201  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||    
T  3950107 aaagagaaatgatatttgtacaaccattttattataattttttga 3950151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 20852919 - 20852963
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||    
T  20852919 gagaaatgatatttgtacaaccattttatgataatttttagacaa 20852963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 2768145 - 2768191
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||| ||||||||||| || ||||||||||| ||||||||||    
T  2768145 aagagaaatgatatttgtacaaccgttttatgataactttttgacaa 2768191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 9314411 - 9314449
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  9314411 gagaaatgatatttgtacatccattttatgacaattttt 9314449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 39021516 - 39021470
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||| ||||||||||| ||||||| |||||| ||||||||||    
T  39021516 aagagaaatgatatttgtacaaccattttgtgataactttttgacaa 39021470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 6445172 - 6445213
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||| || ||||||||||| |||||||||||||||||||    
T  6445172 aaagagagatgatatttgtacaaccattttatgataattttt 6445213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 28570480 - 28570439
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataatttttt 199  Q
    ||||||||| |||||||||||||||||||||||  |||||||    
T  28570480 aagagaaataatatttgtacatccattttatgacgatttttt 28570439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 28578073 - 28578032
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataatttttt 199  Q
    ||||||||| |||||||||||||||||||||||  |||||||    
T  28578073 aagagaaataatatttgtacatccattttatgacgatttttt 28578032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 37873177 - 37873132
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||| ||||||||| | |||||||||||||| ||||||||||    
T  37873177 agagaaatgatatttgtaaaaccattttatgataactttttgacaa 37873132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 10344324 - 10344368
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||||| ||||||| ||||||||| |||||    
T  10344324 gagaaatgatatttgtacatctattttataataatttttggacaa 10344368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 20473779 - 20473823
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||||| | |||||||||||||    
T  20473779 gagaaatgatatttgtacaaccattttataacaattttttgacaa 20473823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 43403831 - 43403875
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||||||| ||||| |||||| |||| |||||||||||||    
T  43403831 gagaaattatattggtacaaccatttgatgacaattttttgacaa 43403875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 43873762 - 43873718
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||| ||| |||||||||||||    
T  43873762 gagaaatgatatttgtacaaccattttgtgacaattttttgacaa 43873718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 50062048 - 50062001
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  50062048 aaagagaaatgatatttgtacatccactttatgataattttttgacaa 50062001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 43755751 - 43755705
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  43755751 aagagaaatgatatttgtacaaccattttatgataattttttgacaa 43755705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 51466767 - 51466813
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  51466767 aagagaaataatatttgaacatccatttaatgataattttttgacaa 51466813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 33125397 - 33125356
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  33125397 aaagagaaatgatatttgaacatccattttatgataattttt 33125356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 46947981 - 46948025
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||    
T  46947981 gagaaatgatatttgtacatccattttatgacaactttttgacaa 46948025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 49699823 - 49699779
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| |||||||||||||||||||| ||||    
T  49699823 gagaaatgatatttgtacaaccattttatgataattttttaacaa 49699779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 1156476 - 1156523
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||||||||||||||||| ||||||   |||||||||||||||    
T  1156476 aaagagaaattatatttgtacattcattttgcaataattttttgacaa 1156523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 32873340 - 32873379
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  32873340 agagaaatgatatttgtacatccattttatgataactttt 32873379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 40610226 - 40610273
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| |||||| ||||| |||||||||| |||||||||||||    
T  40610226 aaagagaaatgatatttatacattcattttatgacaattttttgacaa 40610273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 49596232 - 49596279
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| ||||||||||| ||||||||| | |||||||||||||    
T  49596232 aaagagaaatgatatttgtacaaccattttattacaattttttgacaa 49596279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 29706777 - 29706736
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||| ||||||||||| |||||||||||||| ||||    
T  29706777 aaagagaaatgatatttgtacaaccattttatgataactttt 29706736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 30439249 - 30439294
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||| ||||||||||| ||| ||||||| |||||||||||||    
T  30439249 agagaaatgatatttgtacaaccaatttatgacaattttttgacaa 30439294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 39669805 - 39669850
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||| ||||||||||| ||||||| ||| |||||||||||||    
T  39669805 agagaaatgatatttgtacaaccattttgtgacaattttttgacaa 39669850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 51193203 - 51193158
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||| ||||||||||||||||||||| | ||||||| |||||    
T  51193203 agagaaatgatatttgtacatccattttataacaatttttggacaa 51193158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 6841789 - 6841833
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||    
T  6841789 gagaaatcatatttgtacaaacattttatgataattttttcacaa 6841833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 8934671 - 8934623
Alignment:
Q  156 caaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||||||||||||||||| | ||||| ||| || ||||||||||    
T  8934671 caaagagaaattatatttgtacaactattttgtgacaactttttgacaa 8934623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 13411998 - 13411954
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||||||||||| | ||||||||| | |||||||||||||    
T  13411998 gagaaattatatttgtataaccattttataagaattttttgacaa 13411954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 23554749 - 23554789
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||||| ||||||||||| ||||||| |||||||||||    
T  23554749 aagagaaatgatatttgtacaaccattttttgataattttt 23554789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 42299257 - 42299213
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||    
T  42299257 gagaaataatatttgtacaaccattttgtgataatttttagacaa 42299213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 48679027 - 48678983
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttga 201  Q
    |||||||||| |||||||||||  |||||||||| ||||||||||    
T  48679027 aaagagaaatgatatttgtacaatcattttatgacaattttttga 48678983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 44894545 - 44894500
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||    
T  44894545 agagaaatgatatttgtacatccattttatgataactttttgacaa 44894500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 7990077 - 7990120
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttttga 201  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||    
T  7990077 aagagaaatgatatttgtacatctattttatgataattttttga 7990120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 26904773 - 26904729
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||    
T  26904773 gagaaaatatatttgtacaaccattttatgataatttttggacaa 26904729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 16567313 - 16567360
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| ||||||||||| ||||||||| |||| ||||||||||    
T  16567313 aaagagaaatgatatttgtacaaccattttattataactttttgacaa 16567360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 16598349 - 16598302
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| ||||||||||| ||||||||| |||| ||||||||||    
T  16598349 aaagagaaatgatatttgtacaaccattttattataactttttgacaa 16598302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 38096513 - 38096466
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| ||||||||||| ||||||| ||| |||||||||||||    
T  38096513 aaagagaaataatatttgtacaaccattttgtgacaattttttgacaa 38096466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 2741957 - 2741916
Alignment:
Q  163 aaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||||||||||   |||||||||||||||||||||||    
T  2741957 aaattatatttgtacaattattttatgataattttttgacaa 2741916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 35586847 - 35586806
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||| ||||||| |||||||||||||||||| ||||    
T  35586847 aaagagaaatgatatttgaacatccattttatgataactttt 35586806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 5068696 - 5068656
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||||| ||||||||||| |||||||||||||| ||||    
T  5068696 aagagaaatgatatttgtacaaccattttatgataactttt 5068656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 23329902 - 23329946
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| | ||||||||| ||||||||| |||||||||||||||    
T  23329902 gagaaatgacatttgtacaaccattttattataattttttgacaa 23329946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 28862143 - 28862111
Alignment:
Q  158 aagagaaattatatttgtacatccattttatga 190  Q
    ||||||||| |||||||||||||||||||||||    
T  28862143 aagagaaatgatatttgtacatccattttatga 28862111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 42663084 - 42663128
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||||||||||| ||| || ||||||||||    
T  42663084 gagaaatgatatttgtacatccattttgtgacaactttttgacaa 42663128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 47849669 - 47849716
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  47849669 aaagagaaatgatatttgtacaaccattttgtgataattttttgacaa 47849716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 37585427 - 37585468
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  37585427 aaagagaaattatatttgtacatctattttatgacaattttt 37585468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 20549458 - 20549418
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  20549458 aagagaaatgatatttgtacatctattttatgataattttt 20549418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 20893313 - 20893269
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||| |||||||||||||||||    
T  20893313 gagaaataatatttgtacaaccattttgtgataattttttgacaa 20893269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 28300286 - 28300330
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||||    
T  28300286 gagaaatgatatttgtacaaccattttattataattttttgacaa 28300330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 24095478 - 24095439
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  24095478 agagaaatgatatttgaacatccattttatgataattttt 24095439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 52727521 - 52727475
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||| |||||||||||  || |||||||||||||||||||||    
T  52727521 aagagaaatgatatttgtacaatcactttatgataattttttgacaa 52727475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 35755981 - 35756022
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||| ||||||| ||| |||||||||||||||||||    
T  35755981 aaagagaaatgatatttgaacaaccattttatgataattttt 35756022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 349486 - 349446
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||||| ||||||||||| ||||||||| |||||||||    
T  349486 aagagaaatgatatttgtacaaccattttataataattttt 349446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 19418228 - 19418184
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||||||| || ||||||||||    
T  19418228 gagaaatgatatttgtacaaccattttatgacaactttttgacaa 19418184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 37754447 - 37754491
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||||| ||||||| ||||||||| |||||    
T  37754447 gagaaatgatatttgtacatctattttataataatttttggacaa 37754491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 49130854 - 49130898
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||||  ||||||||| |||||||||||||    
T  49130854 gagaaatgatatttgtacatttattttatgacaattttttgacaa 49130898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 55466958 - 55467002
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||||| | |||||||||||||    
T  55466958 gagaaatgatatttgtacaaccattttataagaattttttgacaa 55467002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 2013359 - 2013312
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||||    
T  2013359 aaagagaaatgatatttgtacattcattttatgacaattttttgacaa 2013312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 34442111 - 34442157
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  34442111 aagagaaatgatatttgtacaaccactttatgataattttttgacaa 34442157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 9634510 - 9634469
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  9634510 aaagagaaatgatatttgaacatccattttatgataattttt 9634469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 38257364 - 38257327
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataatttt 197  Q
    |||||||||||||||||||| |||||||||||||||||    
T  38257364 gagaaattatatttgtacattcattttatgataatttt 38257327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 18508076 - 18508116
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  18508076 aagagaaatgatatttgtacatccattttatgataactttt 18508116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 1095898 - 1095859
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataatttt 197  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  1095898 aagagaaatgatatttgtacatccattttatgacaatttt 1095859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 10749753 - 10749706
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| ||||||||||| ||||||||||| ||| |||||||||    
T  10749753 aaagagaaatgatatttgtacaaccattttatgacaatcttttgacaa 10749706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 34139112 - 34139065
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| ||||||||||||| | ||| |||||||||||||||||    
T  34139112 aaagagaaatgatatttgtacatctactttgtgataattttttgacaa 34139065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 43994086 - 43994040
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||| ||| ||||||| ||||||||||| |||||||||||||    
T  43994086 aagagaaatgatagttgtacaaccattttatgacaattttttgacaa 43994040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 36517193 - 36517234
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||| ||||||| ||||| |||||||||||||||||    
T  36517193 aaagagaaatgatatttgaacatctattttatgataattttt 36517234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 4114494 - 4114454
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||||||||||||||||| ||||||||| |||| ||||    
T  4114494 aagagaaattatatttgtacaaccattttattataactttt 4114454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 36816487 - 36816443
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| |||||| |||| | |||||||||||||||||||||||    
T  36816487 gagaaatgatatttatacaactattttatgataattttttgacaa 36816443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 39247534 - 39247490
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||| |||||| ||||||||||    
T  39247534 gagaaatgatatttgtacaaccattttgtgataactttttgacaa 39247490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 40371117 - 40371157
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  40371117 aagagaaatgttatttgtacatctattttatgataattttt 40371157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 30420626 - 30420664
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  30420626 gagaaatgatatttgtacatccattttatgataattttt 30420664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 21012566 - 21012606
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  21012566 aagagaaattatatttgtacaaccattttatgacaattttt 21012606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 38500939 - 38500987
Alignment:
Q  156 caaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||||||||    
T  38500939 caaagagaaatgatatttgtacaaccattttgtgacaattttttgacaa 38500987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 38704269 - 38704230
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  38704269 agagaaatgatatttgaacatccattttatgataattttt 38704230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 7144573 - 7144615
Alignment:
Q  156 caaagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||    
T  7144573 caaagagaaatgatatttgtacaaccattttatgataactttt 7144615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 34124621 - 34124659
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  34124621 gagaaatgatatttgaacatccattttatgataattttt 34124659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 19481256 - 19481215
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||| ||||||| |||||||||||||||||| ||||    
T  19481256 aaagagaaatgatatttgaacatccattttatgataactttt 19481215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 32912035 - 32912076
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttt 198  Q
    |||||||||| ||||||| |||| ||||||||||||||||||    
T  32912035 aaagagaaatgatatttgaacattcattttatgataattttt 32912076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 12662018 - 12661974
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||    
T  12662018 gagaaatgatatttgtacatccactttgtgacaattttttgacaa 12661974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 4314 - 4359
Alignment:
Q  159 agagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||||    
T  4314 agagaaatgatatttgtacaaccattttatgataactttttgacaa 4359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 6427 - 6471
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||    
T  6427 gagaaatgatatttgtacatccattttatgacaactttttgacaa 6471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 11785351 - 11785399
Alignment:
Q  156 caaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||||||||    
T  11785351 caaagagaaatgatatttgtacaaccattttgtgacaattttttgacaa 11785399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 11635614 - 11635656
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataatttttt 199  Q
    |||||||||| ||||||||||| | ||||||||||||||||||    
T  11635614 aaagagaaatgatatttgtacaacaattttatgataatttttt 11635656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 16368120 - 16368080
Alignment:
Q  158 aagagaaattatatttgtacatccattttatgataattttt 198  Q
    ||||||||| ||||||||||| ||||||||| |||||||||    
T  16368120 aagagaaatgatatttgtacaaccattttataataattttt 16368080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 21857638 - 21857594
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||||||| ||||| |||||||    
T  21857638 gagaaatgatatttgtacaaccattttatgacaatttgttgacaa 21857594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 27102115 - 27102159
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||| | |||||||||||||||    
T  27102115 gagaaatgatatttgtacaaccattttctaataattttttgacaa 27102159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 27143937 - 27143981
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||||||| | |||||||||||||||    
T  27143937 gagaaatgatatttgtacaaccattttctaataattttttgacaa 27143981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 27336 - 27383
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| |||| |||||||||||||| ||| |||||||||||||    
T  27336 aaagagaaatgatatatgtacatccattttgtgacaattttttgacaa 27383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 190956 - 190909
Alignment:
Q  157 aaagagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    |||||||||| |||| | |||||||| |||||||||||||||||||||    
T  190956 aaagagaaatgatatgtctacatccactttatgataattttttgacaa 190909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 16387 - 16431
Alignment:
Q  160 gagaaattatatttgtacatccattttatgataattttttgacaa 204  Q
    ||||||| ||||||||||| ||| ||||| |||||||||||||||    
T  16387 gagaaatgatatttgtacaaccactttattataattttttgacaa 16431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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