View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4586_low_4 (Length: 611)

Name: NF4586_low_4
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4586_low_4
NF4586_low_4
[»] chr4 (10 HSPs)
chr4 (11-592)||(42769493-42770052)
chr4 (190-418)||(42743797-42744031)
chr4 (190-418)||(42753156-42753390)
chr4 (194-418)||(42762778-42763002)
chr4 (267-418)||(42717169-42717320)
chr4 (190-418)||(42734482-42734716)
chr4 (458-579)||(42717023-42717147)
chr4 (446-579)||(42734726-42734862)
chr4 (439-520)||(42762694-42762775)
chr4 (188-225)||(42717371-42717408)
[»] chr5 (2 HSPs)
chr5 (252-411)||(23040511-23040670)
chr5 (190-235)||(23040443-23040488)


Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 11 - 592
Target Start/End: Complemental strand, 42770052 - 42769493
Alignment:
Q  11 tagataatactgataaatttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagtaacacaatgttatgc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  42770052 tagataatactgataaatttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagt--------------- 42769968  T
Q  111 ttctgatacatatatagtttacacataatacctaatttttcactctaactccattattatattatttgttcatgatatataggaagctaattggagcaag 210  Q
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42769967 -------acatatatagtttacacataatacctaatttttcactctaactccatttttatattatttgttcatgatatataggaagctaattggagcaag 42769875  T
Q  211 atatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769874 atatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatca 42769775  T
Q  311 accgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataagg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769774 accgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataagg 42769675  T
Q  411 tatgttggccaccgcttgctgtaggcggtggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggc 510  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769674 tatgttggccaccgcttgctgtgggcggtggatgctatgaagcagacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggc 42769575  T
Q  511 gtctgtgggtggtgatcccgtagaattttatgaaagcagtattgctatagggtctttccatgcagttgctaatggcattgtt 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769574 gtctgtgggtggtgatcccgtagaattttatgaaagcagtattgctatagggtctttccatgcagttgctaatggcattgtt 42769493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 190 - 418
Target Start/End: Complemental strand, 42744031 - 42743797
Alignment:
Q  190 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 283  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||       | ||  || |  | |||||| ||||||| |||||||||| ||||||    
T  42744031 taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt 42743932  T
Q  284 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 383  Q
    || |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  42743931 gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac 42743832  T
Q  384 ctaacgcacgagttgcggcctataaggtatgttgg 418  Q
    | || ||||||||||| ||||||||||| ||||||    
T  42743831 caaaagcacgagttgcagcctataaggtttgttgg 42743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 190 - 418
Target Start/End: Complemental strand, 42753390 - 42753156
Alignment:
Q  190 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 283  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||       | ||  || |  | |||||| ||||||| |||||||||| ||||||    
T  42753390 taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt 42753291  T
Q  284 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 383  Q
    || |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  42753290 gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac 42753191  T
Q  384 ctaacgcacgagttgcggcctataaggtatgttgg 418  Q
    | || ||||||||||| ||||||||||| ||||||    
T  42753190 caaaagcacgagttgcagcctataaggtttgttgg 42753156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 194 - 418
Target Start/End: Complemental strand, 42763002 - 42762778
Alignment:
Q  194 aagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatg 293  Q
    ||||| |||||||||||||||||||  ||||||| | ||||| || ||  || | ||| ||||||| |  | ||||||||||| ||   ||| |||||||    
T  42763002 aagcttattggagcaagatatttttttaaaggctttctggcaaatccttatagagccaaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatg 42762903  T
Q  294 gttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacg 393  Q
    ||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||| || |||||    
T  42762902 gttcacacactttatcaactgctggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacg 42762803  T
Q  394 agttgcggcctataaggtatgttgg 418  Q
    |||||| ||||||||||| ||||||    
T  42762802 agttgcagcctataaggtttgttgg 42762778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 267 - 418
Target Start/End: Complemental strand, 42717320 - 42717169
Alignment:
Q  267 atagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaac 366  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||   |||||    
T  42717320 atagtgcacgtgacattgatggtcatggtacacatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaatggaac 42717221  T
Q  367 agcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttgg 418  Q
    ||||||||||||||| || || ||||||||||  ||||||||||| ||||||    
T  42717220 agcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttgg 42717169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 190 - 418
Target Start/End: Original strand, 42734482 - 42734716
Alignment:
Q  190 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 283  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||||       | ||  || |  | |||||| ||||||| ||||||| || |||  |    
T  42734482 taggaagcttattggcgcaagatatttttacaaaggctatatggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcccgtgacagt 42734581  T
Q  284 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 383  Q
    |  |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||    |||||||||||||||||||| |    
T  42734582 gtaggtcatggttcacatactttatcaactgctggaggaaattttgttgctaatgcaagtgtatttggctatggaaatggaacagcaagtggtggatcgc 42734681  T
Q  384 ctaacgcacgagttgcggcctataaggtatgttgg 418  Q
    | || ||||||||| | ||||||||||| ||||||    
T  42734682 caaaagcacgagtttccgcctataaggtttgttgg 42734716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 458 - 579
Target Start/End: Complemental strand, 42717147 - 42717023
Alignment:
Q  458 attttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtgat---cccgtagaattttatgaaagcagtattg 554  Q
    |||||||||||||| ||||||||||||  ||| ||||| || ||| |||| | |||| |||||||||||   || || |||||||| || |||||||||     
T  42717147 attttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtattt 42717048  T
Q  555 ctatagggtctttccatgcagttgc 579  Q
    | |||||||||||||||||||||||    
T  42717047 ccatagggtctttccatgcagttgc 42717023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 446 - 579
Target Start/End: Original strand, 42734726 - 42734862
Alignment:
Q  446 tatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtga---tcccgtagaattttatg 542  Q
    ||||| || || |||||||||||||| ||||||||||||  ||| |||||||||||| |||| | |||| || |||||||   ||| || |||||| | |    
T  42734726 tatgatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagtgtctttgagtggtgattttcctgttgaatttcacg 42734825  T
Q  543 aaagcagtattgctatagggtctttccatgcagttgc 579  Q
    | ||||||||| | |||||||||||||||||||||||    
T  42734826 atagcagtatttccatagggtctttccatgcagttgc 42734862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 520
Target Start/End: Complemental strand, 42762775 - 42762694
Alignment:
Q  439 tggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggt 520  Q
    |||||| ||||| || ||||||||||||||||| ||||||||||||  ||| |||||||||||| |||||| |||| |||||    
T  42762775 tggatgttatgatgcagacattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtctttgggt 42762694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 42717408 - 42717371
Alignment:
Q  188 tataggaagctaattggagcaagatatttttacaaagg 225  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42717408 tataggaagcttattggagcaagatatttttacaaagg 42717371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 252 - 411
Target Start/End: Original strand, 23040511 - 23040670
Alignment:
Q  252 caaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttgg 351  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||| ||||| |||||||||||    
T  23040511 caaatgaaacattcaatagtgcacgtgactttgatggtcatggttcacatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtatttgg 23040610  T
Q  352 caatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggt 411  Q
    |||||||| |||||||||||||||||||||||| || || |||||||| |||||||||||    
T  23040611 caatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggt 23040670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 23040443 - 23040488
Alignment:
Q  190 taggaagctaattggagcaagatatttttacaaaggctatttggca 235  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||    
T  23040443 taggaagcttattggagcaagatattttaacaaaggctatctggca 23040488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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