View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4586_low_40 (Length: 256)
Name: NF4586_low_40
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35029847 - 35030091
Alignment:
| Q |
1 |
cccaccatcaccaacaacttcaaatggaaaagtttgacatactcctactgtacacctttttgcttgccaacttagatagatagtgaccatcatatcacag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35029847 |
cccaccaccaccaacaacttcaaatggaaaagtttgacatactcctactgtacacctttttgcttgccaacttagatagatagtgaccatcatatcacaa |
35029946 |
T |
|
| Q |
101 |
gtagctaaacatatgtcgtgattagcgtcaaatgtcattggattcttaa-----ttttgttttgttttgtaatgatctaattcattaacattatcttcat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35029947 |
gtagctaaacatatgtcgtgattagcgtcaaatgtcattggattcttaattttgttttgttttgttttgtaatgatctaattcattaacattatcttcat |
35030046 |
T |
|
| Q |
196 |
cctgattttcattctcaaacaagcaggcatgtcatgttgtttcat |
240 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
35030047 |
cctgattttcattctcaaacaagtaggcatgtcatgttatttcat |
35030091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University