View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_42 (Length: 254)
Name: NF4586_low_42
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 8571735 - 8571958
Alignment:
| Q |
18 |
agtgtaatcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattctaattcctccaaaaccaccagcagctttgtggaatgcaaga |
117 |
Q |
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| T |
8571735 |
agtgtaatcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattctaattcctccaaaaccaccagcagctttgtggaatgcaaga |
8571834 |
T |
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| Q |
118 |
gatgggaaataatagaaactaccaatttgatctttcacttgaagtatgtatgtgaagttctttccaggtggaatgggacatgttgttccaaacactccat |
217 |
Q |
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| T |
8571835 |
gatgggaaataatagaaactaccaatttgatcttttacttgaagtatgtatgtgaagttctttccaggtggaatgggacatgttgttccaaacactccat |
8571934 |
T |
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| Q |
218 |
cttcgtatgagttccttctctgct |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
8571935 |
cttcgtatgagttccttctctgct |
8571958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 53754347 - 53754570
Alignment:
| Q |
18 |
agtgtaatcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattctaattcctccaaaaccaccagcagctttgtggaatgcaaga |
117 |
Q |
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| T |
53754347 |
agtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatcctaatgcctccaaaaccaccagctgctttttgaaatgctaga |
53754446 |
T |
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| Q |
118 |
gatgggaaataatagaaactaccaatttgatctttcacttgaagtatgtatgtgaagttctttccaggtggaatgggacatgttgttccaaacactccat |
217 |
Q |
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| T |
53754447 |
gatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcctccctggtgggatggggcatgttgttcccgaaacaccat |
53754546 |
T |
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| Q |
218 |
cttcgtatgagttccttctctgct |
241 |
Q |
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||||| |||||||||||||||||| |
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| T |
53754547 |
cttcgaatgagttccttctctgct |
53754570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 28940785 - 28940921
Alignment:
| Q |
84 |
tccaaaaccaccagcagctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatctttcacttgaagtatgtatgtgaagttctttcca |
183 |
Q |
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||||||||||||||| || ||||| || ||||||||||| ||||| |||| || |||||||||||||| ||||||||| |||||||||||||||| ||| |
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| T |
28940785 |
tccaaaaccaccagctgccttgtgaaaagcaagagatggaaaatagaagaagcttccaatttgatctttgacttgaagtgtgtatgtgaagttcttccca |
28940884 |
T |
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| Q |
184 |
ggtggaatgggacatgttgttccaaacactccatctt |
220 |
Q |
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|| || |||||||||||||| ||| | |||||||||| |
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| T |
28940885 |
ggagggatgggacatgttgtaccataaactccatctt |
28940921 |
T |
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