View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_44 (Length: 253)
Name: NF4586_low_44
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 6989438 - 6989206
Alignment:
| Q |
18 |
cagacgaccacgacctggattttctgattctttttctaatattggtaataattaatttcaatccttttatctttactctttaattccatctctactnnnn |
117 |
Q |
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| T |
6989438 |
cagacgaccacgacctggattttctgattctttttctaatattggtaataattaatttcaatccttttatctttactctttaattccatctctactaaaa |
6989339 |
T |
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| Q |
118 |
nnnggttgaattaccgaacaaattagagacggatttcatt--------------ttttccgtcactaattcaataagaaaacagttgaattatttatttg |
203 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6989338 |
gaaggttgaattaccgaccaaattagagacggatttcattttttccgtctcaaattttccgtcactaattcaataagaaaacagttcaattatttatttg |
6989239 |
T |
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| Q |
204 |
ctgtactaatgtttgaatgaatgtaccatatat |
236 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6989238 |
ctgtactaatgtttgaatgaatgtaccatatat |
6989206 |
T |
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